Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1962 ATGGAAAAGCACAAGTGCAAGCTTTGCTTCAGGAGATTCTCCAATGGAAGAGCATTGGGTGGACACATGAGGTCTCACATGATGAACCTTCAAATTTCAAAGCAAGAAGAAGAGTCATCAAGAACAATTCAACTCAGTTTTGAAGCTGAATCAGCTCCATCATCATCATCATCTGAAGGTGAAGAAGATGATAAGGGTCTTTCTTATGGCCTCAGAGAGAATCCAAAGAGAAGCATTCGCCTTGTAGATCCTGAGTTTTCCTTCGCTGCTCCGGAAAATGGGTCTTCCATTCTTCTTCAAGATAGAGAGAGCGAGACAGAGTCATCCAAGAACAACCCTACACGTGCAAGATCCAAAAGGGCATGGAAAATCGGTGATTCAGATCATAAAAATCGTGAAGCCGTGATGAAAAAGGTTGTTAAATTTTGTGAAACTAGTAAAACAGAATCGTGGGTCGCTGATCATGAACCTGTTAGTTCGGTTTCTGATGCGACAACAGAGGAAGATGTTGCATTTTGCCTCATGATGCTGTCCAGAGACAAATGGAAAAGGCAGAAGAAAGATCAGAAAATGATGGATGATCAATACGAAGATGAAGATGAAGAACAAGAAGAGGATCAAGATGATGAAGAAGATGAAGAAGCTGAGAGATCCATGGAAGACAGTGAAGAAGAATCACAGGAATTGATTAAAATTTCCAAGAACAAAGCACGTAAAGGAAGGTACAAATGTGAGACATGTAACAAAGTGTTTCGATCTTATCAAGCACTTGGTGGACACAGAGCGAGTCACAAGAAGATGAAGATGAACTCAAAAATGGATCATCAAAATCAACAATCACAATTTGAGGGTGGAAATTGTGGAACTAGTTTTGTGGTGGAAAAGAAGATTCATGAGTGCCCTGTTTGTTTCAGAGTGTTTGCATCTGGTCAAGCACTAGGTGGGCATAAGAGAACCCATGTTACTGGATCATCAATGACAATGACAATCCCACCAGCTCCATGTTCTTCAAAAGTTGGAAGCAGCTTCATAGATCTTAATCTCCCTGCTCCAGTTGATGATGATGATCTTAGCCAAATAGAGAACTCTGCAGTTTCAGATGCAGAGTTTGTCAAACTCAAAGCAAAACCTATTAGGCATTGA 1143 0.4077 MEKHKCKLCFRRFSNGRALGGHMRSHMMNLQISKQEEESSRTIQLSFEAESAPSSSSSEGEEDDKGLSYGLRENPKRSIRLVDPEFSFAAPENGSSILLQDRESETESSKNNPTRARSKRAWKIGDSDHKNREAVMKKVVKFCETSKTESWVADHEPVSSVSDATTEEDVAFCLMMLSRDKWKRQKKDQKMMDDQYEDEDEEQEEDQDDEEDEEAERSMEDSEEESQELIKISKNKARKGRYKCETCNKVFRSYQALGGHRASHKKMKMNSKMDHQNQQSQFEGGNCGTSFVVEKKIHECPVCFRVFASGQALGGHKRTHVTGSSMTMTIPPAPCSSKVGSSFIDLNLPAPVDDDDLSQIENSAVSDAEFVKLKAKPIRH* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1962 380 MobiDBLite consensus disorder prediction 92 125 - -
Lja1g1962 380 MobiDBLite consensus disorder prediction 194 223 - -
Lja1g1962 380 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lja1g1962 380 Coils Coil 193 232 - -
Lja1g1962 380 MobiDBLite consensus disorder prediction 183 232 - -
Lja1g1962 380 MobiDBLite consensus disorder prediction 33 74 - -
Lja1g1962 380 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 373 - -
Lja1g1962 380 ProSitePatterns Zinc finger C2H2 type domain signature. 244 264 IPR013087 -
Lja1g1962 380 ProSitePatterns Zinc finger C2H2 type domain signature. 300 320 IPR013087 -
Lja1g1962 380 SMART c2h2final6 4 26 IPR013087 -
Lja1g1962 380 SMART c2h2final6 298 320 IPR013087 -
Lja1g1962 380 SMART c2h2final6 242 264 IPR013087 -
Lja1g1962 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Lja1g1962 380 Pfam C2H2-type zinc finger 4 27 - -
Lja1g1962 380 Pfam C2H2-type zinc finger 298 320 - -
Lja1g1962 380 Pfam C2H2-type zinc finger 241 266 - -
Lja1g1962 380 MobiDBLite consensus disorder prediction 33 56 - -
Lja1g1962 380 MobiDBLite consensus disorder prediction 58 74 - -
Lja1g1962 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 325 IPR013087 -
Lja1g1962 380 Gene3D Classic Zinc Finger 239 320 - -
Lja1g1962 380 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 373 IPR044303 GO:0006355
Lja1g1962 380 Gene3D Classic Zinc Finger 1 64 - -
Lja1g1962 380 MobiDBLite consensus disorder prediction 103 125 - -
Lja1g1962 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 269 IPR013087 -
Lja1g1962 380 SUPERFAMILY beta-beta-alpha zinc fingers 241 320 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1962 Lja-Chr1 22482887 22484029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1962 1 360 C2H2 Transcription Factor Family AT3G60580 44.077 1.00e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g1962 zf-C2H2_6 1.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1962 - - vra:106780254 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1962 1 22482887 22484029 Lja1g1962 1 22482887 22484029 ECH