Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1957 ATGAACCAGATGAAGGCCGTGCCCCTTCCCTTTCAGGAATTTCGAGGGAAAGGGGTCTTAGATTTTGCTGCTTCTGCTGGTGTTGGTGATTCTTTGCAGCAAGAGCAGTTTCTGCAAAGGTGGAACACTCGCAGGGAAAACTGTTGCTATGTGGGCTTTGAGCCCACCACCTACACAAACCCACCTACACCTTGCTCCACACTGTCTTCCTCACACGGCAGCACCGGTGGCGGTGGCTGCGGCTCCACCGATAGCTCCACCGGCGCAGCAAAGGTCTCAGGCGAAAAGGGGAACAGCAACCACAACCCACCCCAAGCAGGGTTAGAAGTTGGCCAGGGAAGATGTGGGATGGGAATGGAGGATTGGGAGAGTGTGCTTTCTGAGTCACCGGGTCAAGATCATTCCATTCTGAAATTGATTATGGGGGACATTGAGGACCCATCTATGGGATTGACCAAGCTTTTGCAGGGGGGAAATTGTTCTCAGGATGTTGAATTCAATGGGGTTGGCATGGGTTTTAGTTTTGTGGATCAGAGTTCTGTGCTTGACCCTATTTCTGGTGGGAACTTTGGGGGCAGCATTGACCCTTCATCTGGTCCTGGGAATTGTTCTGATTTCAATTTCAATACCCACAACAATGTTAACTCTAATGTTGCAAGAGCAGGTTCAGGTGTGAATCCAAACCCTGTGTTCCCTGCTTCAGCTAGCAATCTCTCACCGGTTTCCCTCCCTCCGGGTATGTTTCAGCCACAGCAGCAGCATCATCAGCCGATGGAGTCTCTTGATGAGAAGCTGCAGCTTTTCAATCCTCAGTTCATTTTGAATCAAAGCCAAGCACAGTTTATGCCCAACCCAGGCTTGGGCTTTCCTTTGACATATTCCCAGCTGCAAGAACATCATCAGCTTCACCCACAGCAGCCTCCGGCGAAACGCCTCAACTCTGGCTCTGCTGGACTAAATTATCAGGTTCCGAGGACGCCCTTTTTCGATTCTGGCCAAGAGATGTTTCTTGGGAGACAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACTGCTTCCACACCATCTGCAGCAGAGGCCATCATCCATGGTGGTGGCACCGAAGCAGAAAATGGTGAACACCGGTAACGGCGGCGAAGATGTGGCAACACACCAGCTTCAACAGGCCATTATTGACCAACTCTTCAAGGCTGCTGAACTGTACGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAGCCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTACTTCTCCACTCGAATGGCAACAAAAATCTGACCTTCTCACCTGCTGGCCTATTGCTCAAGATTGGCGCTTACAAATCGTTCTCAGAAATCTCACCGGTCCTGCAGTTTGCCAATTTCACTTGTAACCAAGCACTGCTTGAAGCTGCTGAAGGGTTTGATCGCATTCACATAATAGATTTTGATATTGGGTTTGGTGGGCAGTGGTCTTCTTTCATGCAAGAGTTAGCACTCAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTGTTACCCTCTCACCATGATGAAATGGAGCTCAGTTTCACACAGGATAATTTGAAGCAATATGCTAGTGAAATCAACATGTCTGTTGAGCTTGAGATTCTGACCCTCGAGTCATTGAATTCTGCTTCGTGGCCCCAGCCACTTCGTGATAGCGAAGCTGTTGTGGTTAACTTACCTATTGGCTCTTTCTCAAATTGTCCCTCATATCTTCCTCTGGTTCTTCGCTTTGTGAAGCAGCTCATGCCCAAAATTGTGGTTACATTGGATAGAAGTTGTGATCGAACTGATGTACCATTTCCTCAGCATCTAATTTTTGCACTCCAGTCTTATTCGGGGCTGCTTGAGTCACTTGATTCTGTTAATGTTCACCCAGATGTCCTTCAGATGATTGAAAAGTATTATGTTCAACCAGCAATGGAGAAGCTTGTTTTGGGCCGTCAGCGTTTGCAGGAAACAACACTTCCTTGGAAAAATATGCTCTTGTCATCTGGTTTCTCGGCCTTGCCATTTAGTAACTTTACAGAGTCCCAAGCAGAGTGTTTGGTGCAGAGGACTCCGGTTAGGGGATTTCATGTGGAGAAGAGGCAGTCTTCCCTTGTTCTGTGCTGGCAAAGGAAGGATCTCATCTCCATTTCAACTTGGAGATGCTGA 2241 0.4846 MNQMKAVPLPFQEFRGKGVLDFAASAGVGDSLQQEQFLQRWNTRRENCCYVGFEPTTYTNPPTPCSTLSSSHGSTGGGGCGSTDSSTGAAKVSGEKGNSNHNPPQAGLEVGQGRCGMGMEDWESVLSESPGQDHSILKLIMGDIEDPSMGLTKLLQGGNCSQDVEFNGVGMGFSFVDQSSVLDPISGGNFGGSIDPSSGPGNCSDFNFNTHNNVNSNVARAGSGVNPNPVFPASASNLSPVSLPPGMFQPQQQHHQPMESLDEKLQLFNPQFILNQSQAQFMPNPGLGFPLTYSQLQEHHQLHPQQPPAKRLNSGSAGLNYQVPRTPFFDSGQEMFLGRQQQQQQQQQLQLLPHHLQQRPSSMVVAPKQKMVNTGNGGEDVATHQLQQAIIDQLFKAAELYDAGNPELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNGNKNLTFSPAGLLLKIGAYKSFSEISPVLQFANFTCNQALLEAAEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVLPSHHDEMELSFTQDNLKQYASEINMSVELEILTLESLNSASWPQPLRDSEAVVVNLPIGSFSNCPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDVPFPQHLIFALQSYSGLLESLDSVNVHPDVLQMIEKYYVQPAMEKLVLGRQRLQETTLPWKNMLLSSGFSALPFSNFTESQAECLVQRTPVRGFHVEKRQSSLVLCWQRKDLISISTWRC* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1957 746 MobiDBLite consensus disorder prediction 60 108 - -
Lja1g1957 746 Pfam GRAS domain family 391 745 IPR005202 -
Lja1g1957 746 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 745 IPR005202 -
Lja1g1957 746 PANTHER SCARECROW-LIKE PROTEIN 6 30 745 - -
Lja1g1957 746 MobiDBLite consensus disorder prediction 60 106 - -
Lja1g1957 746 ProSiteProfiles GRAS family profile. 381 745 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1957 Lja-Chr1 22399155 22402244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1957 390 746 GRAS Transcription Factor Family AT4G00150 59.722 2.40e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g1957 GRAS 2.9e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1957 - - gmx:100805945 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1957 1 22399155 22402244 Lja1g1957 1 22399155 22402244 ECH