Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1953 ATGGAAGTGGGTTTGACATTGGGAATAACACAAAAACAAAGTCATATATCAGTAATGAATTTTATTTCTTCACCAAATGTTCCTCGCTGGCTTCAAGTCCTCCTCACTGAGAAGTTCTACAACGCTTGCATAATTCATGAAGAGGCAAGGAAGAATGAAAAGAACGTGTACTGTTTGGATTGTTGCATCAGTCTCTGCCCTCACTGTTTGGACCCTCATCGCTCACACAGACTCTTGCAGATTAGAAGATATGTCTACAATGATGTTATAAAGTTGGATGATGCTACCAAGTTAATTGACTGCACTCTTGTTCAATCCTACACCACCAACAGTGCAAAAGTGGTATTTCTACACGAAAGGCCACATCCAAAGAACAACAGTTTGAGAGGCTCCGGCAATTTCTGCACCACCTGTGACAGAAGCTTGCAAGACCCATATCAATTCTGCTCTCTCTCTTGCAAGATCAACCACCTGGTGAAAACAGCGGCGGGTTCAATCTCCGGCCACCTGTTCGAGTGCAACTACATGGCGTTGCCGGAGACTGGCTCCGACGACGGTCTGATGACCCCTGACACGGTGCTTGAACCGGCTGGTTCAGCCCGCACGTCGTCTGGTTCCGGCGGGTATGGTGGTGCGGTGGTGGATTGCATGGCGGCACTGGCTTGCACCGCCACCACTGAGGTCGTGAGGAAGAAGAGAACCAGCTGTTCCACTTTCAGGCCGCCGTGCCGTCCGGCGTGCTCCCCGGTGTCGGAAATGGCGGAAATCTCGGCGGCGCTGATGAACCGGAGGAAAGGGAATCCTCAGAGGGCCCCACTGTATTAG 825 0.5067 MEVGLTLGITQKQSHISVMNFISSPNVPRWLQVLLTEKFYNACIIHEEARKNEKNVYCLDCCISLCPHCLDPHRSHRLLQIRRYVYNDVIKLDDATKLIDCTLVQSYTTNSAKVVFLHERPHPKNNSLRGSGNFCTTCDRSLQDPYQFCSLSCKINHLVKTAAGSISGHLFECNYMALPETGSDDGLMTPDTVLEPAGSARTSSGSGGYGGAVVDCMAALACTATTEVVRKKRTSCSTFRPPCRPACSPVSEMAEISAALMNRRKGNPQRAPLY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1953 274 Pfam PLATZ transcription factor 82 155 IPR006734 -
Lja1g1953 274 ProSiteProfiles Zinc finger B-box type profile. 38 81 IPR000315 GO:0008270
Lja1g1953 274 PANTHER BNAC04G22060D PROTEIN 24 274 - -
Lja1g1953 274 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 24 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1953 Lja-Chr1 22347775 22350177 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lja1g1953 PLATZ 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1953 - - pvu:PHAVU_008G142900g 409.068