Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1948 ATGTCTCCTTGTGTAACCGCTTTGTTTCTCTTCCTAGCCATGGCTACAACCACCTCATGCTACAAACAAATGGAGGTTCTGCACATTGCTCAAATTCAAGTCTCCCAAGCCAAAAGTTACATTGATAACATGAGAATATTGCATTATGGCGATTTGGATCAAACAAGTGTGGTGGCTTTAAGGGATTGTGTAAAGTTATATGAAGAGAGCCAGTCTAGGCTTTCTCATATGATGGCTAACGACACCGTTTATACCACACAAGATGATGCACTTACGTGGGTAAGTGCTGTGATGACAAACCATAGGGCTTGCTTGGATGGGTTGAAGGACAAAGAGGGTTTGGGAAGCTCAGTATCCGAATCAGATGCTGGATTTCTAGCATCATGGAGTAGTGAGACTTCTAGTGCAGACTTCATCGTGGCACAGGATGGTTCAGGTACCCACAAAACAATCAGGGACGCCGTTGTTTCCCTGGCTGCAATAGATAAAAAACGTCGTCCTGCAAGATCCATTATTTATGTTAAATCAGGAGTCTACAATGAGAAAGTTGAAATTGGACACAACTTGAAGAATGTGATGTTTGTAGGAGATGGCATAGACAAAACTATTGTCATTGGCAATAGAAATTTCATTGATGGCTATTCTACTCTTAGCTCAGCTACATTTGATGTATCTGGGGATGGGTTTTGGGCCAGAGATATGACATTTGAGAACACAGCAGGTCCTCAAAAGCATCAAGCAGTGGCACTAAAGGTTAGCTCCGACCGATCAGTCTTCTATAGATGCAGCTTCAAAGACTGCCACATATATGGCACCATTGATTTCATATTTGGTGATGCCTCAGTGGTATTCCAAAATTGTGACATCTATGTAAGGAGACCAATGGACAATCAAGCCAACTTCATCACAGCACAGGGAAGAGATGATCCTCATAAACCCACTGGGATTTCAATTCAGAATTGCCAGGGCTCCATGATCAGGAGCTACTTAGGGAGGCCATGGAAAAAGTACTCAAGGACAGTGTTTATGAAGACAGATTTAGATGGGTTGATTGATCCAAAGGGATGGGGTGAGTGGGATGGAAACTATGCACTTTCAACTTTATACTATGGAGAGTATATGAACACGGGAAGTGGTGCCTCTACCCAGTACAGGGTGAACTGGCCTGGTTTCCATGTTTTGCAAACAGATATTGAGGCATCACCATTCACTGTGAGCCAGCTATTGCAAGGAGAGCAGTGGATTCCAACTACAGGGGTTCCATTCTGGTCTGGAATTTAA 1281 0.4325 MSPCVTALFLFLAMATTTSCYKQMEVLHIAQIQVSQAKSYIDNMRILHYGDLDQTSVVALRDCVKLYEESQSRLSHMMANDTVYTTQDDALTWVSAVMTNHRACLDGLKDKEGLGSSVSESDAGFLASWSSETSSADFIVAQDGSGTHKTIRDAVVSLAAIDKKRRPARSIIYVKSGVYNEKVEIGHNLKNVMFVGDGIDKTIVIGNRNFIDGYSTLSSATFDVSGDGFWARDMTFENTAGPQKHQAVALKVSSDRSVFYRCSFKDCHIYGTIDFIFGDASVVFQNCDIYVRRPMDNQANFITAQGRDDPHKPTGISIQNCQGSMIRSYLGRPWKKYSRTVFMKTDLDGLIDPKGWGEWDGNYALSTLYYGEYMNTGSGASTQYRVNWPGFHVLQTDIEASPFTVSQLLQGEQWIPTTGVPFWSGI* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1948 426 CDD PMEI-like_4 1 121 - -
Lja1g1948 426 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 8 112 - -
Lja1g1948 426 Gene3D Invertase/pectin methylesterase inhibitor family protein 14 130 IPR035513 -
Lja1g1948 426 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 113 IPR006501 GO:0004857
Lja1g1948 426 PANTHER PECTINESTERASE 8 112 - -
Lja1g1948 426 PANTHER PECTINESTERASE 124 425 - -
Lja1g1948 426 SUPERFAMILY Pectin lyase-like 132 425 IPR011050 -
Lja1g1948 426 Pfam Plant invertase/pectin methylesterase inhibitor 27 116 IPR006501 GO:0004857
Lja1g1948 426 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 119 IPR035513 -
Lja1g1948 426 Pfam Pectinesterase 137 412 IPR000070 GO:0030599|GO:0042545
Lja1g1948 426 SMART PMEI_2 12 136 IPR006501 GO:0004857
Lja1g1948 426 ProSitePatterns Pectinesterase signature 2. 269 278 IPR033131 -
Lja1g1948 426 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 124 425 - -
Lja1g1948 426 Gene3D - 131 426 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1948 Lja-Chr1 22263665 22269413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1948 115 426 Carbohydrate Esterase AT3G60730 62.722 5.00e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1948 K01051 - gmx:100810741 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1948 1 22263665 22269413 Lja1g1948 1 22263665 22269413 ECH