Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1945 ATGGTGAAGATTCACGGATTCAAGTTCGGAAAGCGGGTCTCTAGATGGATCGGATGGAAGATCCGAACCCGTACCCGACCCGGATATCATCGCCTTGGTGGTGGTGGTCCTTCTCCTTCTAAATCATTGGCCATCACTAAGCTCCTCAAGTGGGGTCGAAAGCTAACAGCATGTGCCACGTCCTTGCTCACGGTGAGACACCACGGGTCGGGTTATGCCCAGTTAGGATCCAACCTGGATCCGAAGGTACCAAAAGGGCACTTGGCCGTGTACGTGGGGGAGGAGGATGGGGAGTTACACCGGGTTCTGGTGCCGGTGATATACTTCAACCACCCTCTGTTTGGGGAGTTGCTGAAGGAGGCGGAGGACGAGTTTGGGTTCCACCACCACGGAGGGATCACCATCCCTTGCCGGGTCACCGAGTTTGAACGGGTCAAGACCCGGATTGCAGCTGGATCCGGAATTAATACTCGTTTAGGATTGGCGTGGACACGCTGA 498 0.5542 MVKIHGFKFGKRVSRWIGWKIRTRTRPGYHRLGGGGPSPSKSLAITKLLKWGRKLTACATSLLTVRHHGSGYAQLGSNLDPKVPKGHLAVYVGEEDGELHRVLVPVIYFNHPLFGELLKEAEDEFGFHHHGGITIPCRVTEFERVKTRIAAGSGINTRLGLAWTR* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1945 165 Pfam Auxin responsive protein 75 146 IPR003676 GO:0009733
Lja1g1945 165 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 155 IPR003676 GO:0009733
Lja1g1945 165 PANTHER SMALL AUXIN-UP RNA-RELATED 5 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1945 Lja-Chr1 22237801 22238298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1945 81 142 Calmodulin-binding Proteins AT3G43120 53.226 5.14e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1945 K14488 - gmx:100783436 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1945 1 22237801 22238298 Lja1g1945 1 22237801 22238298 ECH