Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1943 ATGTGCATCACCCAGCACACCTATATAAAATCTTACGAGGAAGTTAACACATTTTCTTTTAAACAAAACATGTCTCTGCTCCATTTCCTCCTCCTGCTGAAACTGCAAATCATCCTCATATGTGCAACTCTATCTAATTCCTCCATAACTGAGCTTGATACTCTTTTGGCCATCAAAGACTCTCTGGACCCAGAAAAACGTGTGTTGATCTCGTGGACCCCACATTCTGACCCTTGCAGTGGTGCTAATTTTGAGGGTGTGGCTTGCAATGAGCAAGGTCTTGTTACTAATATTTCACTGCAGGGGAAGGGTCTTTCTGGAAGGATACCTTCAGCCATGGCTGGTCTTAAGAACTTAACGGGTTTGTATCTGCACTTCAATGCTCTGAATGGGATTTTACCAAAGGAGATTGCAAGTTTGACTCAGCTGAGTGATTTGTACCTCAATGTGAATAATCTCTCTGGTGAGATACCTCGTGAGGTTGGCAATATGTCAAATCTTCAAGTTTTGCAGCTTAGTTATAACGAGCTTACTGGGAGTATACCTACTGAACTGGGAAAGTTAAGGAAGCTTAGCTTTCTCGCACTGAAAAATAATCACTTAACTGGAGCAATTCCTGCAAGTATTGGTAAATTGGAGACATTAGAACGATTGGATCTGAGCTTCAATAGCCTCTTTGGTCCAATTCCAGTGACATTGGCCAATGCACCGGAACTGCAGAGCCTAGATATTCAAAACAATTCTCTCTCGGGCAATGTCCCTATCGCTCTGAAAAAACTTAAAGGTGGGTTCCAATACATCAACAACCCTGCTTTATGTGGGAATGGATTTGCCTATTTAGACACTTGCAAAAAAGTAAGAAACTCGGACCCCGTTAGACCCGAACCATATGAACCTGGAAATCTTTCTACAAGAGACTTCTCTGCATCAGTTGAACCAAAAGCTAGAAACTGCAGTGATGATCAGTGCAAAAAGCAATCAGAATCTTCAAAGATTGGTTTGGTTTTTGGGGTTGTTGGAGTTATTGTTGCTGCCACAGTTTCTGGACTTTTTGTGCTCTTATGGTACCATAATCAGAAACAGAAAATTGGAAGAGCTCCTGAAATTTCCGATAGCCGGCTTAGTACTAACCAGACCAAGGAAGCATGCAGGAAGCGTGCATCTCCTCTTATAAATTTGGAGTATTCTAAAGGATGGGATCCTTTAGCTAAAGGTCAAGATGGTTATTCCCAGGAATTTCTTGAGAGCTTTATGTTCAATCTTGAAGAAGTGGAACGTGCTACTCATTGCTTCTCAGAGCTAAATTTATTGGGGAAGAGTAGTTTTTCTGCTGTCTACAGAGGAATATTGAGAGATGGGTCCATTGTGGTTATAAAGCGCGTTTTGAAGACAAACTGCAAGTCTGATGAGGCTGAATTCTTGAAAGGTTTGAAGATATTGACCTCGTTAAAGCATGACAATCTTGCTCGGTTGAGAGGCTTTTGCTGTTGCAAAGGCCGGGGTGAGTGTTTTCTGATTTATGATTTTGTCTCAAATGGGAGCTTGTTACAGTACCTTGATGTTGAGAGAGGCAATGGTAAGGTACTCGAATGGTCCACCAGAGTATCCATCATTCATGGTATTGCCAAAGGTATTGGTTATCTTCATGGAAAGGAAGGAAGCAAACGTGCTCTAGTTCACCAGAACATATCAGCTGAAAAAATACTTCTCGATTCTCGGTACAATTCCTTACTTGCAGATTCAGGATTGCACAAACTCCTTGCAGACGATGTTGTTTTTTCCACCCTCAAAGCTAGCGCTGCCATGGGATATTTGGCCCCAGAATACGCAACAACAGGTCGTTTGACCGAAAAGAGTGATGTGTATGCATTTGGAGTTATAGTTTTCCAGCTTCTCACTGGAAAACGTGATATCTCACCCTTAAGGGTGGAAAGGGCTAGTTGTAAAGATATTGTTGATGAGAATCTTGAAGGGAAATTCTCAGAATTAGAGGCAGAAAAACTGGGGGGAATTGCTTTGATTTGCACCCATGAATCTCCCCATCTTCGACCATCTATGGACAATGTATTGCTTGAACTTGGTTTGTGA 2088 0.4181 MCITQHTYIKSYEEVNTFSFKQNMSLLHFLLLLKLQIILICATLSNSSITELDTLLAIKDSLDPEKRVLISWTPHSDPCSGANFEGVACNEQGLVTNISLQGKGLSGRIPSAMAGLKNLTGLYLHFNALNGILPKEIASLTQLSDLYLNVNNLSGEIPREVGNMSNLQVLQLSYNELTGSIPTELGKLRKLSFLALKNNHLTGAIPASIGKLETLERLDLSFNSLFGPIPVTLANAPELQSLDIQNNSLSGNVPIALKKLKGGFQYINNPALCGNGFAYLDTCKKVRNSDPVRPEPYEPGNLSTRDFSASVEPKARNCSDDQCKKQSESSKIGLVFGVVGVIVAATVSGLFVLLWYHNQKQKIGRAPEISDSRLSTNQTKEACRKRASPLINLEYSKGWDPLAKGQDGYSQEFLESFMFNLEEVERATHCFSELNLLGKSSFSAVYRGILRDGSIVVIKRVLKTNCKSDEAEFLKGLKILTSLKHDNLARLRGFCCCKGRGECFLIYDFVSNGSLLQYLDVERGNGKVLEWSTRVSIIHGIAKGIGYLHGKEGSKRALVHQNISAEKILLDSRYNSLLADSGLHKLLADDVVFSTLKASAAMGYLAPEYATTGRLTEKSDVYAFGVIVFQLLTGKRDISPLRVERASCKDIVDENLEGKFSELEAEKLGGIALICTHESPHLRPSMDNVLLELGL* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1943 695 Gene3D Transferase(Phosphotransferase) domain 1 510 695 - -
Lja1g1943 695 CDD STKc_IRAK 437 693 - -
Lja1g1943 695 SUPERFAMILY L domain-like 49 260 - -
Lja1g1943 695 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 30 694 - -
Lja1g1943 695 Pfam Leucine rich repeat N-terminal domain 50 90 IPR013210 -
Lja1g1943 695 SUPERFAMILY Protein kinase-like (PK-like) 409 692 IPR011009 -
Lja1g1943 695 Pfam Protein tyrosine and serine/threonine kinase 435 691 IPR001245 GO:0004672|GO:0006468
Lja1g1943 695 ProSiteProfiles Protein kinase domain profile. 431 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1943 695 Gene3D Ribonuclease Inhibitor 201 272 IPR032675 -
Lja1g1943 695 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 30 694 - -
Lja1g1943 695 Gene3D Ribonuclease Inhibitor 49 200 IPR032675 -
Lja1g1943 695 Gene3D Phosphorylase Kinase; domain 1 404 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1943 Lja-Chr1 22220538 22224902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1943 24 544 Miscellaneous Gene Families AT4G22730 50.093 1.83e-172 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lja1g1943 PK_Tyr_Ser-Thr 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1943 - - var:108327466 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1943 1 22220538 22224902 Lja1g1943 1 22220538 22224902 ECH