Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1942 ATGGGTTCTATCACCAACACAAATCCACTACTAGCACCACCAAATCCACCTTTCAAGGATTGTTCTCAAGGAGTCTGCAGTCTCTATTGCCCACAGTGGTGCTACATCATCTACCCTCCTCCACCTCCTTCAATCACACTCGGCGACGATGACCCAGATGGCGGAGACTCCTCCGCCTTCGAATTCTCACCTCTGGTGGTCGCCGTCATCGGAATCCTCGCCAGCACTTTCATCTTAGTCACCTACTATTCCATCATCTCACGGTTCTGCAGGCGCAGACGAGGAAACCCCACTGACGCATTTTCACAAACAGATCATGGGCATGGCGGTGACGCCGACGCGGGTCATCTTCCTTCTTCATCTTCTGGGTTAGATGAATCTCTCATCAAATCCATCACTGTTTTCAAGTACAGTAAAGGTAATAATGGGTTGGTGGTGGAGGGTAGTGATTGTTCTGTTTGTTTGAGCGAGTTTCAGGAGAATGAGAGTTTGAGATTGTTGCCGAAATGCAACCACGCTTTTCATCTTCCTTGTATTGATCCGTGGTTGAAATCGCATTCGAGTTGTCCTCTTTGCCGGTCCATTATCGCCCCTGTTATCACATCGATGGAGGCGCCGGCGAGTGTCACTATCAATGCCTCGGAACACCAGCTGAGGAACAATGATGTTGTTTTGATTATTCAGAGTTCTGAGCTGATTAGGACACAGCAACAAGAAGTGGTTGTTGATTTTGGTGGTGATGTTGTACCAAAGGTGTCAGTGGAAGATGGTCATGGTGGAGTGAATGTGGAGCATTGTTGTAATAGTCAAAGAAGGAGGGTGTCTGTTGCTGACATTTTGAGTGAAGGTGATGATGATATTGAGTTGCAGAAGGTGGGATCTGATATTATAGGATCATCAAGAGGATGA 909 0.4719 MGSITNTNPLLAPPNPPFKDCSQGVCSLYCPQWCYIIYPPPPPSITLGDDDPDGGDSSAFEFSPLVVAVIGILASTFILVTYYSIISRFCRRRRGNPTDAFSQTDHGHGGDADAGHLPSSSSGLDESLIKSITVFKYSKGNNGLVVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDPWLKSHSSCPLCRSIIAPVITSMEAPASVTINASEHQLRNNDVVLIIQSSELIRTQQQEVVVDFGGDVVPKVSVEDGHGGVNVEHCCNSQRRRVSVADILSEGDDDIELQKVGSDIIGSSRG* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1942 302 MobiDBLite consensus disorder prediction 100 122 - -
Lja1g1942 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 198 IPR013083 -
Lja1g1942 302 CDD RING-H2_PA-TM-RING 150 193 - -
Lja1g1942 302 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Lja1g1942 302 SUPERFAMILY RING/U-box 143 199 - -
Lja1g1942 302 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 288 IPR044675 -
Lja1g1942 302 Pfam Ring finger domain 150 193 IPR001841 -
Lja1g1942 302 SMART ring_2 151 192 IPR001841 -
Lja1g1942 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 8 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1942 Lja-Chr1 22217776 22219161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1942 1 294 C3H Transcription Factor Family AT3G03550 45.541 5.37e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1942 - - lja:Lj0g3v0281709.1 505.368