Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1941 ATGCCTCCGAGGAAGAAACCCAACAACGCCTCATCTTCATCATCATCTTCCTCTGCTACCTCCTCCAAGAAGCCCCTTCCACAACCCTCCAAGTACGGCATCCAGCACTTCTTCGACCGCCACACGCAACTCACCTCTCAGAAGCAGCAGCAGCAAGCCACCACCAATGTCACCTCCGCCGGCGAGGTTCTGTCTTCTTCGCAGAACACTCCGCCTGCGAATCCGCCCTTGCCGCCGCCGCCGGCCAATACTGCTGTAGAGACTCCCTCACTGTCTGAGGTGTCTCCGGAGATCTCGAAGTCCGTGTCGCGTAATAAGCGCGTCAAATTCTCGCCTGGAATGTTTATCAAGCCGAGCCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCTGTGAATGAAAGGCTTCAAGCAGTATCGAAACAAATGCCTGAGATAATTAAAGCTTTGGCCGAGTCCTCGAGGATCAACTTGTCGCCGATTCACGGCTGCTCCGAAGATGAGACGTTTCGGGATAAAGATGGCAGGGTTGAAAAGTTGCTTACTAATACATCAATTCCTAATGGTTCCGCAAAACCTCTGGTGCCAATGAGTAAATTAGGCCCGCAAAGGATTAACCCTGGCCGAGACGTGGAGTTTAGTGTCAATTCAACGGCTGTGAGCAGTTCTGGAGTTTCTGGTGATGAGAGTCCCTTCAGAACTCCACCGTCATTGTCCTTTCGCCAGGATAAGGTGCAGCTTGCCAAGGGTGTTGAACATAGTGGACCATCTGACCAACTTTTCCTAAGACAGCACAAAAAGGCATTGCTTGAACTATTAGATCAAGTTGAAGATGCAATCACTGTTGACAACGATGCAATTTGTAATAAAACCACTTATTCCTTCAAATCTCAAGATGGAATTGCTAATGACCCTGCCAGAGCTAACCATGCAGTAGAAAGGACAAAGTCACACAAGCCTAAAGAGGCCACTAGTGTTCTCTCCAATTCTAGTTATTTGGCTTTGGAGGTATCAGAAAAGCACAGGCCTGCTAATTCCTCTTCTGCTCAATGCCCATACAAGGTGCTCCGATTACTAAATGAAAAAACTGGAGAAGAGCGGGTTGTAAACTTGAGAGATGAGTGGTCTTACAGTGTAATTGCACCTGGGGATACTGTGAACATAATCGGTCAATTTGATGAAGGCGGAAATTGTGATATTGATCATGATAATAATTTTTTGATTGTACACCCAGATACTTTAGTGTCTGGCACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATCCAATGATTACTCAACTGCAGCATTAACTGGAACCTTACTTCACCAAATTTTTCAGGCTGCGCTTACAAACGATAGTCCTACAATAAACTTTTTAGAAGATTACACAAAAGTGGTTGTGCAGAGAAATATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAAAGATGTTCACAAGACCTTGGTTGGTTCTATCCCAAGAATATTAAGTTGGATCAAGCGGTTCAAAAATATGGAGGAAAACAAAGACCCTAATGTAAATTTTCGATGTGACGAGGGGCTGAAGCAAGTTGTCATATCTGAGGTAATAGATATTGAAGAAATGTCATGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTCAGAGTAAAAGTTCAATCAAGAAAAGATGAACAAGTGGAGAAGATCATGCCAGTGGAGTTCAAAACCGGAAAATCACCAAATAGTCAGTCATCAGTAGAACATAGTGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACAATTGATTCTGGTCTTTTATATTATCTCCAATCAGACCAGACACAGGGTATTATGGTTCAAAGATCTGACTTAGTTGGACTAATAATGAGACGTAATGAGCTAGCAAGTGATATTCTTAAGGCATTAACTTCGCAACAACTGCCACCAATGTTGCAGAGTCTTGGCATTTGCAGAGGTTGTCGCCATCTTAATGTCTGCAGCATTTATCATAAGGCCCATGGTGGAAGCACAGAGAGCAGTGGATTGGGAGATGTGTTTGATTCTCATAGTAATCACCTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCGGTTGATTGACTTAGAAGCTAAAGGGACTGAGCTCTCAAAGAAAGAGGTGTGGCGATCACATAGTTTAAAGACTCGAAACAGTGGTGGCCTTTCTTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCTCTTAAAGATAATTGTTTCGTCTATCGTTTTGTACAAGATACTTCTTGCCTCTCTGATGTTTCTGATGGTGATCCTTCTAGTGCTGCTTTGAAAAGTGATTTAGATCTCACACTTAAAAGTGGAGACCATGTGATATTAAGCAATGAATCTAGCCATCAAACTATTGCAAAAGGGGTGATCTCAGATATTAGTCAGATCCACGTATCAGTTTCTTTTACTAAGTGCTTGCGAATTCCTGGGAGGCCTTCCACCACACATGATCTCCTTCAACAAGTTTGGAGAATTGACAAGGATGAATTTGTGACCTCATTTGCAATTATGAGGTTTAATCTCGTACAACTTTTTCTTCAAAATGATCAAAGTGCTCATCTCCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGATCTATAGTTAGCCAGGATCCAGCAATATCCTATGTTTGGTCAGAGAAGAGTTTGAATGATGATCAACGTAGAGCCATTCTCAAGATACTTACGGCAAAAGACTATGCCCTTATATTAGGGATGCCGGGAACAGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTGCTAACAGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGCATTGATTTTGTACGTATTGGAAGGCATGAGGCCGTGAATGAAGAGGTCAGAGGTCACTGCCTCTCAGTAACGAATGTACAAAGTGTTGAAGATATTAAAATAAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTGGGCATCTCCAGTCCCTTGCTTACTAACATGAGATTCGATGTATGCATTATGGATGAAGCTGGACAGACAACTTTACCGGTGTCCTTGGGCCCTCTAACATTTGCTTCGACGTTTGTTCTTGTTGGGGATCATTATCAACTTCCACCACTTGTCCAAAGTACAGAAGCCCGAGAGAATGGCATGGGGATGAGTTTATTTTGTAGGCTCTCAGAAGCACATCCACAGGCAATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGAATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTAAGGTGTGGTTCATCTGAGATAGCTGATGCAAAACTTGAGTTTACTGGTTTCAAATGTGGTGTGCCTTGGCTAGAGAATGTTTTGAATCCAGGAAGGCCCGTGATATTTATTGATACTGACATGTTGCCTGCTTTGGAGGCAAGAGATCAGAAGGTTGTGAATAACCCAATTGAAGCTTTCATAATTGCTGAGATTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGAACACATTGGCATTATTACTCCTTATAATTCACAGGCAAACCTCATCCGGCATGCTGCTTGCATAACATCCTTGGAGATACATACCATTGACAAATACCAGGGAAGAGATAAGGACTGTATATTAGTTTCTTTTGTGAGGTCTAGTGAAAACCCAACAAGCTATGCTGCTTCTCTTCTTGGAGACTGGCACAGGATAAACGTGGCTCTTACGCGTGCTAAGAGAAAGTTGATAATGGTGGGGTCTCGTAGAACTCTATTGAAGGTTCCTCTACTGAAGCTTCTCATTAAGAAGGTTGAGGAGCAATCTGGAATTGTATGTGTGTCTAAGACGGATATCTATCGAAAATGTGAGCTCAAGAGATGTTCGCAAATGAGATGA 4032 0.4271 MPPRKKPNNASSSSSSSSATSSKKPLPQPSKYGIQHFFDRHTQLTSQKQQQQATTNVTSAGEVLSSSQNTPPANPPLPPPPANTAVETPSLSEVSPEISKSVSRNKRVKFSPGMFIKPSQDDGADEVTWKISPVNERLQAVSKQMPEIIKALAESSRINLSPIHGCSEDETFRDKDGRVEKLLTNTSIPNGSAKPLVPMSKLGPQRINPGRDVEFSVNSTAVSSSGVSGDESPFRTPPSLSFRQDKVQLAKGVEHSGPSDQLFLRQHKKALLELLDQVEDAITVDNDAICNKTTYSFKSQDGIANDPARANHAVERTKSHKPKEATSVLSNSSYLALEVSEKHRPANSSSAQCPYKVLRLLNEKTGEERVVNLRDEWSYSVIAPGDTVNIIGQFDEGGNCDIDHDNNFLIVHPDTLVSGTRVAASFSCPRRTVLDERLKSNDYSTAALTGTLLHQIFQAALTNDSPTINFLEDYTKVVVQRNIESLYACGVNEKDVHKTLVGSIPRILSWIKRFKNMEENKDPNVNFRCDEGLKQVVISEVIDIEEMSWAPKYGLKGMIDASVRVKVQSRKDEQVEKIMPVEFKTGKSPNSQSSVEHSAQVILYTLLMSERYQKTIDSGLLYYLQSDQTQGIMVQRSDLVGLIMRRNELASDILKALTSQQLPPMLQSLGICRGCRHLNVCSIYHKAHGGSTESSGLGDVFDSHSNHLTSSHSKFLCHWDRLIDLEAKGTELSKKEVWRSHSLKTRNSGGLSSIVLDASQGIPHQKSLKDNCFVYRFVQDTSCLSDVSDGDPSSAALKSDLDLTLKSGDHVILSNESSHQTIAKGVISDISQIHVSVSFTKCLRIPGRPSTTHDLLQQVWRIDKDEFVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEKSLNDDQRRAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVNEEVRGHCLSVTNVQSVEDIKIRLEQVKVVAVTCLGISSPLLTNMRFDVCIMDEAGQTTLPVSLGPLTFASTFVLVGDHYQLPPLVQSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIADAKLEFTGFKCGVPWLENVLNPGRPVIFIDTDMLPALEARDQKVVNNPIEAFIIAEIAKELVKNGIEGEHIGIITPYNSQANLIRHAACITSLEIHTIDKYQGRDKDCILVSFVRSSENPTSYAASLLGDWHRINVALTRAKRKLIMVGSRRTLLKVPLLKLLIKKVEEQSGIVCVSKTDIYRKCELKRCSQMR* 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1941 1343 Pfam AAA domain 1026 1091 IPR041677 GO:0004386
Lja1g1941 1343 Pfam AAA domain 924 1013 IPR041677 GO:0004386
Lja1g1941 1343 MobiDBLite consensus disorder prediction 86 101 - -
Lja1g1941 1343 Pfam Domain of unknown function DUF83 573 682 IPR022765 -
Lja1g1941 1343 MobiDBLite consensus disorder prediction 39 70 - -
Lja1g1941 1343 MobiDBLite consensus disorder prediction 7 28 - -
Lja1g1941 1343 Gene3D - 1122 1334 IPR027417 -
Lja1g1941 1343 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 2 49 - -
Lja1g1941 1343 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 65 1343 - -
Lja1g1941 1343 MobiDBLite consensus disorder prediction 1 105 - -
Lja1g1941 1343 PANTHER DNA2/NAM7 HELICASE FAMILY 65 1343 IPR045055 -
Lja1g1941 1343 PANTHER DNA2/NAM7 HELICASE FAMILY 2 49 IPR045055 -
Lja1g1941 1343 Gene3D - 857 1022 IPR027417 -
Lja1g1941 1343 Gene3D - 1023 1121 IPR027417 -
Lja1g1941 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1308 IPR027417 -
Lja1g1941 1343 MobiDBLite consensus disorder prediction 71 85 - -
Lja1g1941 1343 Pfam AAA domain 1100 1300 IPR041679 -
Lja1g1941 1343 Gene3D - 417 682 IPR011604 -
Lja1g1941 1343 Pfam DNA replication factor Dna2 363 565 IPR014808 -
Lja1g1941 1343 CDD DEXXQc_DNA2 923 1123 - -
Lja1g1941 1343 CDD SF1_C_Upf1 1124 1302 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1941 Lja-Chr1 22199244 22217234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1941 1 1065 Core DNA Replication Machinery Family AT1G08840 56.004 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1941 K10742 - gmx:100799415 1837.39