Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1938 ATGGGTTGCTTTTACTACTTCAAAGACAAATCCAAGAAGTGGAAGCAAAGATCAGCACCTGAACTGAAAGAGCAAGAGAAATTTCAGTATTCAGGGGATGAAAGAGTCACCAAGTCTTCGTGCTCTTCATCTTCGCCTCGTGGTCTCCAAGAATTGTATGATAAGAAGCCCCACAATTTGCAGGTTTTTTCCTTCAGGGAGCTCAGCCTTGCAACGGATGACTTCAGTAGGCTTAAGAAGATAGGAGAAGGGGGATTTGGGAGTGTATATAAAGGCTCAATCAAACCAGCTGTTGATGGGAATGGTGATCCTACTTTAGTTGCTATTAAAAGGCTTAACCAGAATGGATTACAGGGTCATAAACAATGGTTGGCAGAAGTGCAGTTTCTTGGTGTTGTAAAACACCCAAATCTTGTCAAACTCGTCGGTTACTGTGCTGTGGATGGTGAAAGAGGAATCCAAAGACTACTTGTATATGAATTTATGTCAAATAAAAGCTTAGAGTCTCATCTTTTCAATAAAGCATTTGATCCTCTTCCTTGGAAAACAAGACTCGAGGTAGCACTAGGAGCAGCTCATGGATCTGATGGAAATCTGGGAGGTAGGAAGAGAATTGATAACTTAGAAACCTCTGTTGCTTGGGTTGAAGACGATCCACTTGAGCCTGAAGAAAAGCCAAATCAATCAGCCCCTTCTGAACTATGGAAAAAGAGGATGGCTCATCTTGCAAAACTTGGTGAGCATGTGGAGAGCGTTAGTAGAAGAAGAGTTATGATGCTGCAGCGAGCCAAAGTTCCTTAG 801 0.4232 MGCFYYFKDKSKKWKQRSAPELKEQEKFQYSGDERVTKSSCSSSSPRGLQELYDKKPHNLQVFSFRELSLATDDFSRLKKIGEGGFGSVYKGSIKPAVDGNGDPTLVAIKRLNQNGLQGHKQWLAEVQFLGVVKHPNLVKLVGYCAVDGERGIQRLLVYEFMSNKSLESHLFNKAFDPLPWKTRLEVALGAAHGSDGNLGGRKRIDNLETSVAWVEDDPLEPEEKPNQSAPSELWKKRMAHLAKLGEHVESVSRRRVMMLQRAKVP* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1938 266 ProSiteProfiles Protein kinase domain profile. 75 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1938 266 PANTHER OS01G0588500 PROTEIN-RELATED 25 194 - -
Lja1g1938 266 Gene3D Transferase(Phosphotransferase) domain 1 58 196 - -
Lja1g1938 266 PANTHER OS07G0495150 PROTEIN 25 194 - -
Lja1g1938 266 Pfam Protein tyrosine and serine/threonine kinase 78 194 IPR001245 GO:0004672|GO:0006468
Lja1g1938 266 MobiDBLite consensus disorder prediction 25 48 - -
Lja1g1938 266 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Lja1g1938 266 SUPERFAMILY Protein kinase-like (PK-like) 57 194 IPR011009 -
Lja1g1938 266 SMART tyrkin_6 75 265 IPR020635 GO:0004713|GO:0006468
Lja1g1938 266 MobiDBLite consensus disorder prediction 34 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1938 Lja-Chr1 22187876 22190376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1938 1 194 Glycoside Hydrolase AT3G07070 39.234 4.76e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g1938 PK_Tyr_Ser-Thr 5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1938 - - lja:Lj0g3v0287239.1 399.438