Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1933 ATGGCAGAAAGGTACTTTTACAAGGACTTACTTCCTTTTGGGGCCATGGTGACCATGGAAGTCATCAACGTTGCCTTGAATACTCTCTTCAAAGCAGCTAGCATGAGAGGGATGAGCTATCATGTCTTTGTTGTTTATTCTTATGCTGTTGCTGCTATTTTACTCCTTCCTGCACCTTTCATCTCCAGAAGATCAAGAGTGCTTCCTCCTCTCAGTTTCTCAGTAATGTGCAAAATTGGTCTGCTTGGGCTGATTGGGTGCACATCTCAGATTGTGGGCTACACAGGCATCAGTTACAGTTCTCCCACTCTCTCCTCCGCAATAAGCAATTTGGTGCCAGCTTTTACCTTTTTGTTTGCCGTCATTTTCAGGATGGAAAAGGTGGCTATAAAATCTTCAAGTACTCAAGCCAAAGTCTTGGGCACCATAGTATCAATAACAGGGGCATTTATAGTGACTCTCTACAAAGGGCCACCAATCATCATTCTTCAAAGATCACTTTCACTTAATCAACCAACAAATAACATTCTTAGATCAGTGGATCGAAATTGGGCCATTGGTGGCCTTCTATTGACAGTAGAGTACACACTGGTTCCACTTTGGTACATAGTACAGGTGCAAATCATGAAGGAGTACCCTAATGAACTAACTGTGGTCTTCTTTTACAACTTATGTGTAAGCACAATGGCTGCAGTTGTAGGTGTGATTACTGAGACAAAGGCAAGTGTTTGGAAAATAGGGCTAAATACAGCATTGGCTTCCATCCTCTGCTCGGGAATTTTTGGATCAATCTTGAACCTTGCAGTTCACACACACATGCTGCATTTGAAGGGGGCAGTCTATGTAGCTATGTTCAAGCCACTCTCAATTGCCATAGCTGTTGTCTTGGGAGTCATGTTCCTTGGTGATACTCTCCATCTTGGAAGTGTAATTGGAGCAACAGTAATATCAATTGGGTTTTATACTGTAATGTGGGGAAAAGCAACAGAAGAAGTGGATGATGTCCCTAGGCAGGAACCACCAACTACAGAGAATGCTCCTCTCTTGCAAAGCTATAAAACTAAGTGGTCAGAAAAGACAATGGATGGAACTGTATAA 1098 0.4244 MAERYFYKDLLPFGAMVTMEVINVALNTLFKAASMRGMSYHVFVVYSYAVAAILLLPAPFISRRSRVLPPLSFSVMCKIGLLGLIGCTSQIVGYTGISYSSPTLSSAISNLVPAFTFLFAVIFRMEKVAIKSSSTQAKVLGTIVSITGAFIVTLYKGPPIIILQRSLSLNQPTNNILRSVDRNWAIGGLLLTVEYTLVPLWYIVQVQIMKEYPNELTVVFFYNLCVSTMAAVVGVITETKASVWKIGLNTALASILCSGIFGSILNLAVHTHMLHLKGAVYVAMFKPLSIAIAVVLGVMFLGDTLHLGSVIGATVISIGFYTVMWGKATEEVDDVPRQEPPTTENAPLLQSYKTKWSEKTMDGTV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1933 365 Pfam EamA-like transporter family 24 153 IPR000620 GO:0016020|GO:0016021
Lja1g1933 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 327 - -
Lja1g1933 365 PANTHER WAT1-RELATED PROTEIN 9 339 IPR030184 GO:0016021|GO:0022857
Lja1g1933 365 PANTHER WAT1-RELATED PROTEIN 9 339 - -
Lja1g1933 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1933 Lja-Chr1 22139394 22143504 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1933 1 355 Nodulin-like Gene Family AT3G28050 57.297 1.22e-138 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1933 - - gmx:100814137 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1933 1 22139394 22143504 Lja1g1933 1 22139394 22143504 ECH
Lja1g1933 1 22139394 22143504 Lja2g1708 2 17127188 17130526 ECH