Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1927 ATGGGAGTTCACGGTCTCTGGGAACTACTCGCCCCCGTCGGCCGCCGCGTCTCCGTCGAAACCCTCGCCGGAAAAACCCTCGCCGTCGACGCGAGCATATGGATGGTGCAGTTCATCAAGGCGATGCGTGACGAGAAAGGTGAAATGGTTCGCAACGCTCATTTGCTAGGTTTCTTCCGTCGGATTTGCAAGCTTCTGTTCCTCCGGACGAAGCCTGTTTTCGTCTTCGACGGCGGAACCCCCGCCTTGAAGCGACGCACCGTCATCGCGCGTCGCAGGCAGCGGGAGAACGCCCAAGCCAAAGTCCGCAAGACTGCCGAGAAATTGCTGCTCAATCATTTAAAGGCGATGAGGTTGAAGGAACTGGCTAATGATATTAAGCACCAGAGGCAGAAGCAGGAGAGTGATGCTAAGGGTCAGAAAAAATCTAGAGACATGGACTTTGTTGGTAGCGATTCAGGAAGAAGTCATGTGAAAGAGAAAGAACTAGATGAAATGTCTGTAGCTAAATCTGCGGCCAAGGAAGACAGGAATTTATCACAGGCAGTAGCATCGGCAAGTTGCAACTTGGAGGAGCTTGATGAAATGCTGGCTGCATCTATAGCTGCAGAGGAAAATGGAATGCTTGCCAGAAAAGGAGTGGCATCTACCGTGAGTTATCCCTCAGAGGGGGAATGCGATGCAGATGAAGAGATGATTATGCTTAAAGGAAAGAAAATAGAAGGACAAGTGGATGAAGTTGACAAACAGAAACCACATGAGGTCAATGACCGGGTCAAGGGTAAGGAGATTCTGTTCAATGAAACTGACATGGTAGGATGTAGCTCAAGATGCGATCATGTGACATCAAGGAGTCATAATCAAGAGAAAATTGATGAAATGTTAGCTGCAACTATTGCTATGGAGGAAAATTCAAATTTAGTAAATAATGTATCAACTTCTCTTGGGGCTTCCACAATTGAGGACGAGGATGGTGACTATGGTGATGATGAAGAGATGATACTGCCAGCAATGTACGGTGAAGTTGATCCAGCTGTTTTGGCCTCTTTGCCTCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAGCGATTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGACGTGAGATAGATGTAGTGCAGAAAGCTGCTACTGGAGGAGGAGTAGGGGGTGTACAGACTTCGCGAATTGCATCTGAAGCCAACCGAGAATATATATTCTCGTCATCTTTTACTGGTGACAAACAAGAACTCACCTCCACTAGAATAGAGAAAAATAATGAAGATAAACAACAGAAGGCACAAGGAACAAGTTCTTCACGGAATTTTGCAAATATCATCACAGTAGGCAATAATTCTGGTACTTCAGTTGGATTGGTTTCTGCTGAACCTGGAGAGCCTGTTGATGAAAATATTGAGACATATCTAGATGAGAGGGGTCGATTTCGAGTAAGTAGAGTAAGAGCTATGGGGATGCGCATGACTCGTGATATACAAAGAAATTTGGATTTAATGAAGGAGATTGAGCAGGAAAGGACATATGTCAATAATGCTGCGAACATTGAAACTGTGCTAAATATAGAGAATAGTGGTCCATCAGAAATTTCTGGGATCCACAATATTGGTAAATCACGAGAGGTAAATGTTGACTTTGTTGGAGAGAATGTGCAAAATGAACAATTAAAACTTGACAGGGATACTTCGTTGGAGGTATCCTTTGAATACGATTGCAAGAATAAGTTTGTAAATGGCGAGGATGATATATTTGCCAGTTTAGTAGGAGGAAATCCAGTGGCACTCTTCTGTGCTGATGCTACTACAGCAGAAGTGCAGTGTTCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAGTTGTTGGAGGTAAGAATACCACATTTCCAAGTCATAATAAAGTGGAACTGAAATCCTCTTCTGCAGACGAGGATAATAATAATGACAGTGAAGTAGAATGGGAGGAAGGATATTGTGGTGGTGCTAAAAGCACCTCACTGTGTCCAGCTGAGTCAGGAAAATTGGCATCCCGAGGATGCTTGCAGGAGGAGTCTGATTTGCAGGAAGCAATAAGGAGAAGCCTTGAGAATACATGGGACGGGAATCTTAATTGCAAATCAACTGTAGATGAGCATTCAAATGCTTATGAGAGAAAATTGGATTCTGAATTAGAACATGATGATAATTTTCGTTGCTCTGGCTCAACGGATTTAAATGATAATAGTATGGGTGGTTCCCCTTTGCCTATGAAGGGTAGTATTGAATCAATTGAATTTCAACAAACTGTAGATGCAGATAAAAAACATGATTGTGTGACTAGAAGTAACCCACAAACTTTCAATTTTCATGGAAGTCAGTCAAAGTCATCTGGGACATTTAATTTGAATAAGACAGAGATATTGATTGACAAACCTCGCGGACTGGATGGACACATTTGTTCTGAAGATTCAATTTCAGATGCAAATGTAATGATGAAGGATGAGGATCCTGTGGTTGCAGAGCAATCATTGGATATACATAATGATGATGGTCAAGTGTCTTTCTACTGTAACAAGGTGTCCAAGGTTTGTCCACTTGGTGTGACTGAAGAGGAGAAAAGGAACCATATTAATGAATCTGAACTATTGAGTAATTCTACCAAGAGTCCAAAGCCTACTATTCTTTTGATGGGGTCATCCTTGAATAGATCTACAGAAGACCTTGATATTGAGCCAAAATTGCCTTCAGAAGACAATGATGGAAATTTATCTGAGGAAAGGAATAAACTTGTCATAGATGCAATGAACACGCCTGGAGTTTTTCCTGCACAATTACCTGAGGTCCAATTGGAGGATGAAATGGAAATTCTTGGTCAAGAGTATATCAACCTTGAAAGTGAGCAGAGGAAGCTTGAGCGTAATGCAGAATCTGTTAATAGTGAATTATTCACAGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCTTATATTATTGCTCCAATGGAAGCTGAAGCGCAGTGTGCTTACTTGGAACTCGCAAATCTGGTTGATGGTGTTGTAACTGATGACTCTGATGTCTTTTTATTCGGGGCTCGTAGTGTTTATAAGAATATTTTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTAACAAGAGAGAAGGTGATTCACATGGCACTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTTTAAATGCGTTTCCTGAAGAAGATGGCCTCCTCAAATTCCGGCAGTGGGTTGAGTCACCAGATCCCACAATTCTTGGAAAGTTGGGAACAAAAAGTGGATCCAATACCAGAAAGAAAGGGTCCAAAGTTGAAGAAAAGATAAATATCGAGTCTGCTTCAGACCAGAACATCTCACAGGTTCAGGAGCAAAAGGAGCCGCCTGATCACATGCCAGAAATAATGCAAACTTTCATGGATAAGCATAGAAATATTAGCAAGAATTGGCATATACCTCCTTCTTTTCCAAGTGAAACGGTTATATCTGCTTACTGTTCTCCACAAGTTGACAAGTCAACTGAGCCGTTCACGTGGGGAAAACCAGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACCAGCCAGAAAGCTGATGAATTGCTATTACCTGTTTTAAAAGAATATAACAAACATGAGACTCAATTGCGATTGGAAGCATTTTACAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCAGTGAAAGGAATTACTGGTAAGCAGCCTTCAGATTTGATAGATGGTTCTGCAGAAAACTTGTCGAAGAGTAGAAAGAGTGGGACAGGAAATCCTGTTGAAGCTGAGGATAACAAATTTGAGACTTCAAAGGTAACAGAAGAAAGTCTTGCGGGTCGGAAGAAATCAAAAGTGAAAGAGTCAATGAAAAGGAAGAATGATGGGAATACAGCAGCTAAGGCACAGTCAAAGAAAAAGAAAATCTATGATGATCCTTTATCAGCACCTGGTACATCTGAGGTGTCAAATTTACAGTCATGTGTACAAACCAAAGAAGGTCGATGTCATAAGGAATTGGTTCCTAATAGAAGTGGCAGAGGAAGAGGAAGAGGCAGAGGTGGAAGTGTAGGAGTAAAAGAAGGAAAGCGAAAGGGAAGTCTCATTTTTGAAACATGTGAAACTGAAACATCATCTAGTAGCACTGACATTGATGATCATGGGCCAAGAGCGCAAGTTGATGTATCACAAGTTCCAGAAGTTGTGCGAAGGTCAACACGATCACGGAAACCTGTCAACTATTTAAAGGACCTTGAAGTTGAAGATGGTGTTGATTCATTTGATCAGAGCAATCAGACATGCTCGTTTGACGAGCCAGCAGAAAAATTATTTCACAATCATGGTGAATGTGGAGATGGTGCAACTGATTTCAGCAATGGGAAAGAAAGCAGTCTAGTAGATCTTCCTCTAAAGGAGAACACACCTAGAGATTATCTGGAGTCAGAAGGTCGGTTTTGCATGGATGCTGGTGAAAGTAGTCCCCCAGGGACTAGCAACCGTGATAGTTCGTTTGATCCTGGCCCTTCTGATGACTACCTTAAAGTGGGAGGTGGATTCTGTTTAGATGATAGTGAGACAGGTAACAATGATGATGCAATTGATAATACAAACACTGCTACAGACGATTATACTGCAGAGTTCCGACACAGTTCTGAATTTGTGGATGAAACTGACTCTGATAAAAATAGTTCTGATAAATTGTTTTCTGGTGCTGAAAAAGCTGAAAATGAGGTAGAAGATGGAACGACTCATCGTAAATCCAATGAAAAGCCAAGTGACCACCTTGAAAATGCTAGTAGTTATAATCATTCTAACATAGGGGCCTTGATACCAGAGAATGCTCAACACATCAGTGAGACCTCTACGGGAGCTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAAGAAGAACTGA 5109 0.4165 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKAMRLKELANDIKHQRQKQESDAKGQKKSRDMDFVGSDSGRSHVKEKELDEMSVAKSAAKEDRNLSQAVASASCNLEELDEMLAASIAAEENGMLARKGVASTVSYPSEGECDADEEMIMLKGKKIEGQVDEVDKQKPHEVNDRVKGKEILFNETDMVGCSSRCDHVTSRSHNQEKIDEMLAATIAMEENSNLVNNVSTSLGASTIEDEDGDYGDDEEMILPAMYGEVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDVVQKAATGGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRIEKNNEDKQQKAQGTSSSRNFANIITVGNNSGTSVGLVSAEPGEPVDENIETYLDERGRFRVSRVRAMGMRMTRDIQRNLDLMKEIEQERTYVNNAANIETVLNIENSGPSEISGIHNIGKSREVNVDFVGENVQNEQLKLDRDTSLEVSFEYDCKNKFVNGEDDIFASLVGGNPVALFCADATTAEVQCSGSDSDCDWEEGVVGGKNTTFPSHNKVELKSSSADEDNNNDSEVEWEEGYCGGAKSTSLCPAESGKLASRGCLQEESDLQEAIRRSLENTWDGNLNCKSTVDEHSNAYERKLDSELEHDDNFRCSGSTDLNDNSMGGSPLPMKGSIESIEFQQTVDADKKHDCVTRSNPQTFNFHGSQSKSSGTFNLNKTEILIDKPRGLDGHICSEDSISDANVMMKDEDPVVAEQSLDIHNDDGQVSFYCNKVSKVCPLGVTEEEKRNHINESELLSNSTKSPKPTILLMGSSLNRSTEDLDIEPKLPSEDNDGNLSEERNKLVIDAMNTPGVFPAQLPEVQLEDEMEILGQEYINLESEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRQWVESPDPTILGKLGTKSGSNTRKKGSKVEEKINIESASDQNISQVQEQKEPPDHMPEIMQTFMDKHRNISKNWHIPPSFPSETVISAYCSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSDLIDGSAENLSKSRKSGTGNPVEAEDNKFETSKVTEESLAGRKKSKVKESMKRKNDGNTAAKAQSKKKKIYDDPLSAPGTSEVSNLQSCVQTKEGRCHKELVPNRSGRGRGRGRGGSVGVKEGKRKGSLIFETCETETSSSSTDIDDHGPRAQVDVSQVPEVVRRSTRSRKPVNYLKDLEVEDGVDSFDQSNQTCSFDEPAEKLFHNHGECGDGATDFSNGKESSLVDLPLKENTPRDYLESEGRFCMDAGESSPPGTSNRDSSFDPGPSDDYLKVGGGFCLDDSETGNNDDAIDNTNTATDDYTAEFRHSSEFVDETDSDKNSSDKLFSGAEKAENEVEDGTTHRKSNEKPSDHLENASSYNHSNIGALIPENAQHISETSTGAFSAMPFLRKRKKN* 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1927 1702 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 244 - -
Lja1g1927 1702 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 246 1701 - -
Lja1g1927 1702 SUPERFAMILY PIN domain-like 2 1097 IPR029060 -
Lja1g1927 1702 Gene3D - 965 1081 - -
Lja1g1927 1702 SMART xpgn3 1 98 IPR006085 GO:0004518
Lja1g1927 1702 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1082 1285 IPR036279 -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1397 1411 - -
Lja1g1927 1702 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 244 - -
Lja1g1927 1702 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 246 1701 - -
Lja1g1927 1702 SMART xpgineu 1013 1082 IPR006086 GO:0004518
Lja1g1927 1702 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Lja1g1927 1702 Coils Coil 969 1003 - -
Lja1g1927 1702 ProSitePatterns XPG protein signature 2. 1016 1030 IPR019974 GO:0016788
Lja1g1927 1702 Pfam XPG I-region 1016 1097 IPR006086 GO:0004518
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1610 1658 - -
Lja1g1927 1702 Coils Coil 116 136 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 123 179 - -
Lja1g1927 1702 CDD H3TH_XPG 1085 1223 - -
Lja1g1927 1702 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lja1g1927 1702 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lja1g1927 1702 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lja1g1927 1702 Gene3D - 1 192 - -
Lja1g1927 1702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lja1g1927 1702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1306 1324 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 442 468 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1516 1672 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1419 1435 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1330 1377 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1595 1609 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1382 1396 - -
Lja1g1927 1702 Gene3D - 1082 1162 - -
Lja1g1927 1702 CDD PIN_XPG_RAD2 999 1083 - -
Lja1g1927 1702 MobiDBLite consensus disorder prediction 1297 1473 - -
Lja1g1927 1702 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Lja1g1927 1702 MobiDBLite consensus disorder prediction 123 172 - -
Lja1g1927 1702 CDD PIN_XPG_RAD2 2 92 - -
Lja1g1927 1702 SMART HhH_4 1084 1117 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1927 Lja-Chr1 22044713 22056177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1927 1007 1114 Core DNA Replication Machinery Family AT5G26680 36.036 1.81e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1927 K10846 - gmx:100820295 2204.87