Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1926 ATGAAAGGAATTTCTTCTATCTGGGTAGTCTTCATCACATCCCTTTTCCTCCTAAACATGACCAATTGTGTGGAGGATGAGGTCAAGACAACACTGGTAAATTTCCTGGCACAACTCTCTAGTACTAATGGCCAACAGAATTCCACTTTGGTTTGGAAACAAGACTCTGATCCTTGTAAGGATCAATGGCAAGGTGTATACTGTGATGCTCAAAACATTTCTATAAAGAAGTTGTATCTTGACAGGTTCAATTTATCTGGAACTCTTGATGTTGCCATGCTTTGTAAATTGCAGCCCCTAGCTGAGTCTCTCACCATTCTTAGTCTAGATGGAAACAACATTGGAGGAGGGATAGCAGCTGAGATTGGAAACTGTACACAACTCACTCAGCTTCACCTGAGTGGAAACCACCTTGCTGGAAACCTTCCTGGTTCACTTGCCATGTTGAATAATTTGAAAAGGCTAGACATTTCAAACAACAATTTCTCAGGACGCTTGCCTGAATTGTCCAGAATCTCAGGGCTGAACATGCTCCTTGCACAAAACAACCACCTCAATGGAGATGTACCTGCGTTCGATTTCAGCAATTTCGACCAATTCAATGTCTCATATAACAACTTCAGTGGCCTTATTCCAGATGTGCATGGTTATTTCTTTGCAGACAGTTTCCTTGGGAATCCTGAACTCTGCGGAGATCCACTGCCAAAAAAGTGTTCTGATATTCCTCTGGCTGTTAGTGAAGCAGAAGCATCAGAAAAATCAAAAGGATCAAAGGGTCCTTCTAAAGAGCAGATTCTTATGTATGCAGGCTATGCTGCATTGGGTGTTGTCCTTATCCTTTTTGTTGTTTTGAAGCTGTGTAGAAGAAAGAAGAAAGAAAAGAAATTTGAAGCATTGAAAAGGGTAGTGTCAACTAATGTTGGTGGTGCTGAAAAGTCCAGCAATGTTGTTACAAGTGAATCCAAAGCAGAGGTAAGCAGATCTGAGTTTTCAGTCACTTCTGAAAGTGGGATGGTTTCACAATCACAATCACAATCACTTATAGTTCTTTCAAGGCCAGTGGTAAGTGAATTGAAATTGGAGGATTTGCTGAGGGCCCCTGCTGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTATAAAGTGATGCTTCTCAATGGCATAACTGTGGTTGTGAAAAGGATCAAGGATTGGACTATTTCCACCCATGACTTCAAGCAAAGAATGCAATTGCTGAGTCAAGCAAAGCATCCTCATGTAGTGTCACCTCTTGCTTTCTATTGTTCCCACCAAGAGAAGCTTTTGGTCTATGAGTATCAGCACAATGGAAGTTTGTTCAAGCTTCTACATGGAACTTCCAAAGCCTTTGACTGGACCAGCAGACTAGGAACTGCAGCTACAATTGCTGAAACATTAGCTTTCATGCACCAGGAGCTTGGCCAGCATGGAATTGCTCATGGAAATCTGAAATCCTCAAACATTTTGCTAAACATTAATATGGAACCTTGCATAAGTGAGTATGGTGTAATGGGCATGGATGATGCACAAAACACACCTACTGCTACTAGTTCATCAGATGTGTTCAAGGGAGATGTTCATAGCTATGGTGTTATTCTTCTTGAACTGCTCACTGGAAAGTTAGTAAAAAGTAATGGGATGGATTTGGCTGATTGGGTTCAGTCAGTTGTAAGGGAAGAATGGACAGGTGAAGTGTTTGATAGGTCTCTCCTATCAGAATATGCAAGTGAAGAGAGGATGGTTAATTTGCTTCAGGTAGCTTTAAGATGTGTCAATCGTTCCCCTGAGGCTAGGCCAAGCATGAACCAAGTTGTTCTTATGATTAACACTATAAAAGAGGATGAAGAAAAATCCTTGATTTATGAACATCAAATCCAACAAAAAGATGCTTCATCTTCATCGCCAAATCCGGGTCATTTCGATAAACAATCGTCAGCACCCTCAGCTTCATCATCGGGTGCTCGAATTAGTCCTGCAGTTCTTTTCGTCATAGTGATTCTGGCTGTTCTGTTTTTCATTTCGGGTTTGCTCCACCTGCTTGTTAGGTTTCTCACAAAGAAGAACCCATCTTCACAATCTGATAGGCACCGCGAAATTTCTAACTCTGATGCTCTTGAAAGACAGCTGCAACAGCTTTTCCATCTCCATGACTTTGGTTTGGACCAAGCTTTCATTGATGCACTTCCTGTTTTCCAGTATAAAGAGATAACGGGGCTGAAGGAGCCCTTAGATTGTGCTGTTTGTCTTTGCGAGTTTTCCGAAAAGGATAATCTCAGGTTGCTCCCTGTGTGCAGCCATGCTTTTCATATCAATTGTATAGATACATGGCTTTTGTCAAACTCAACATGCCCACTTTGTAGGGGAACACTCCTTGGCCTCGCTGCTGGCTTTTCGGTCGAAAATCCAATATTTGATTATGATGATTTGAGGGATGATGAGGGCTGCTATGGGGAAAATGAATTCCGTAATAGAAAAAAATCAGTTGAAATTCAAGACATTGTAGAAAAGGGGATTTTCCCTGTAAGGCTTGGGAAATTTAGAAGGCTGGATGTGGAGGCAGTGGAGACTATAGGAGGAGAGACTAGTAGCAGTAATTTGGATGCAAGAAGATGTTACTCAATGGGATCTTACCAATATGTCCTTGGCAAATCAGACTTGCGGATAACCTTGAACAATGACCGAAAAAGTTGCGATGCTAAGCTCAAGAAAGAAAGCGAAAACTTGGAGAAACTTTCTGTTGAGGGTGATATTGAAGCAAAGAAGATTAGAAGAGTTGGTAAAGGTGAGAGCTATTCTGTTTCCAAAATCTGGTTGTGGTCAGAGAAGGGCAAATTTTCAGTTTCTTCTGATGCTGGAATGGGCATGCCATCTTCTCTTAATGCAGAATTGCCATGGATGAGGGAAACAGAAGGGTCATGA 2937 0.415 MKGISSIWVVFITSLFLLNMTNCVEDEVKTTLVNFLAQLSSTNGQQNSTLVWKQDSDPCKDQWQGVYCDAQNISIKKLYLDRFNLSGTLDVAMLCKLQPLAESLTILSLDGNNIGGGIAAEIGNCTQLTQLHLSGNHLAGNLPGSLAMLNNLKRLDISNNNFSGRLPELSRISGLNMLLAQNNHLNGDVPAFDFSNFDQFNVSYNNFSGLIPDVHGYFFADSFLGNPELCGDPLPKKCSDIPLAVSEAEASEKSKGSKGPSKEQILMYAGYAALGVVLILFVVLKLCRRKKKEKKFEALKRVVSTNVGGAEKSSNVVTSESKAEVSRSEFSVTSESGMVSQSQSQSLIVLSRPVVSELKLEDLLRAPAELIGRGKNGSLYKVMLLNGITVVVKRIKDWTISTHDFKQRMQLLSQAKHPHVVSPLAFYCSHQEKLLVYEYQHNGSLFKLLHGTSKAFDWTSRLGTAATIAETLAFMHQELGQHGIAHGNLKSSNILLNINMEPCISEYGVMGMDDAQNTPTATSSSDVFKGDVHSYGVILLELLTGKLVKSNGMDLADWVQSVVREEWTGEVFDRSLLSEYASEERMVNLLQVALRCVNRSPEARPSMNQVVLMINTIKEDEEKSLIYEHQIQQKDASSSSPNPGHFDKQSSAPSASSSGARISPAVLFVIVILAVLFFISGLLHLLVRFLTKKNPSSQSDRHREISNSDALERQLQQLFHLHDFGLDQAFIDALPVFQYKEITGLKEPLDCAVCLCEFSEKDNLRLLPVCSHAFHINCIDTWLLSNSTCPLCRGTLLGLAAGFSVENPIFDYDDLRDDEGCYGENEFRNRKKSVEIQDIVEKGIFPVRLGKFRRLDVEAVETIGGETSSSNLDARRCYSMGSYQYVLGKSDLRITLNNDRKSCDAKLKKESENLEKLSVEGDIEAKKIRRVGKGESYSVSKIWLWSEKGKFSVSSDAGMGMPSSLNAELPWMRETEGS* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1926 978 Gene3D Transferase(Phosphotransferase) domain 1 441 640 - -
Lja1g1926 978 Pfam Ring finger domain 750 793 IPR001841 -
Lja1g1926 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 797 IPR013083 -
Lja1g1926 978 Gene3D Phosphorylase Kinase; domain 1 331 439 - -
Lja1g1926 978 SUPERFAMILY RING/U-box 730 796 - -
Lja1g1926 978 SUPERFAMILY L domain-like 48 216 - -
Lja1g1926 978 MobiDBLite consensus disorder prediction 630 654 - -
Lja1g1926 978 Gene3D Ribonuclease Inhibitor 22 238 IPR032675 -
Lja1g1926 978 SUPERFAMILY Protein kinase-like (PK-like) 368 614 IPR011009 -
Lja1g1926 978 Pfam Protein kinase domain 369 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1926 978 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Lja1g1926 978 ProSiteProfiles Protein kinase domain profile. 365 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1926 978 CDD RING-H2_PA-TM-RING 750 793 - -
Lja1g1926 978 ProSiteProfiles Zinc finger RING-type profile. 751 793 IPR001841 -
Lja1g1926 978 PANTHER OS10G0387400 PROTEIN 6 628 - -
Lja1g1926 978 SMART ring_2 751 792 IPR001841 -
Lja1g1926 978 PANTHER OS05G0588300 PROTEIN 6 628 - -
Lja1g1926 978 Coils Coil 900 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1926 Lja-Chr1 22036720 22042363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1926 31 618 Receptor kinase-like Gene Family AT1G68400 34.321 2.59e-89 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g1926 PK_Tyr_Ser-Thr 4.9e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1926 1 22036720 22042363 Lja1g1926 1 22036720 22042363 ECH
Lja1g1926 1 22036720 22042363 Lja2g1709 2 17144754 17146754 ECH