Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1923 ATGTATAGAATACTATCGACGCCGGCGTCAAAGCTCCGCCACTTCCGGCGACTGCGCTCCAGACCCAAAACAGACGAAGAAAACGCGCAGCACATCCTATGGCATTACCAGATCCTCGACCCAGACAGCGACATTGTTGCTTACTGGAACAAGGTCTTCCTCATCGCCAGCCTTCTCGCGCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTCGGCGGCCCTGCTTGCCTCCAGGCCAATCGCAGCCTCGGCCGTTTCCTCAACGTGCTCCGCTCCTTCGCCGACCTCTTCTACCTCCTCCACATGATCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAATTCTAGAATCTTCGGCCGCGGTGACCTCATCATGGATCCCTGGGAAATCGCTTCCCGTTACTTGAGATCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTTTGCCCCAGATTGTGATTTGGTTAGTGATTCCGGCGAGTAGAACGGGAACTGATCATACCAACAACACTCTTGCGCTTTTCATTCTTATTCAGTACATTCCTCGATTGTTTCTCATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATCGCGAAGACTCCCTGGATTGGAGCCGCCTACAATCTTGTCCTCTACATGCTTGCTAGCCATGTTACAGGAGCAACCTGGTATCTTTCGTCAATAGGGAGACAATTTAACTGCTGGAAAATGCAGTGCCATGATGAAAATAAATCACATCGCCTGTCTTGCTTGCCTAGTTATCTTGATTGTAATAGTTTGGATCTACCTGAAAGGCAATACTGGCTGAATATCACTCGTGTGGTTAGCAAGTGCGATGCCAAGAGCAAGATCAACATCAAATATAAATTTGGGATGTTTGCAGATGCTTTCCTTAATGATGTTGTCTCTTCCAGTTTTAAGGAAAGATACTTCTATTGTCTGTGGTGGGGTTTAAGAAATTTAAGCTCATATGGACAGAATTTGGATACAACAACATACCTTGTGGAGACCTGTTTTTGCATCATCTTATGTATTGCTGGATTAGTTCTTTTTTCACTTTTGATTGGAAACTTTCAGACGTACTTGTCATCGATGTCTATTAGACTAGAAGAGTGGAGGATCAGGAAAAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCAAGATTTGCAAGCACGTGTCCGGCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAAGCCTTACTGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTACCTTTCTTCTCACAAATGGACGATCAGCTCCTTGATGCCATTTGTGAACGCCTTGTGTCATCATTAAGCACCCAAGGAACCTACATATTTCGAGAGGGCGATCCAGTGGATGAAATGCTGTTCATCATTAGAGGGCAATTGGAGAGCTCTACAACAAATGGAGGAAAGTATGGATTCTTCAATTCCATTACACTCAGGCCTGGTGACTTCTGTGGAGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCCACTCGTACAGTCAAGGCTCTCACTGAAGTAGAAGCTTTCGCGCTACAGGCAGAGGATCTGAAATTTGTGGCGAGTCAGTTCAAGCGCCTCCACAGCAAGAAACTTCAGCACGCTTTTAGGTTTTATTCCCATCAATGGAGGACATGGGGTTGTTGCTTCATACAAGTTGCCTGGAGAAGGTATCAGAAGAGGAAGGCATCAAGGGAGTTATCACTAAGAGAGAGGCTTTACATGGCAGAGCCTGCTACACAGAATGATTATTACATGGGAAGGTATGAAAGTGAAGATTACGAGGATACGGTCGGGGAATCATCATCAGCGGATGGGAAAAAGGTTCAAAATCTCGGTGCAACTGTTTTGGCCTCAAGGTTTGCTACCAATACAAAGAAAGGGAACCATAAGCTTCAAGGTGGTGATCCTGTGCCCCAATTGTTCAAGCCAGACGAACCTGATTTCTCCATGGACCATGATGATGTTTAG 2088 0.4646 MYRILSTPASKLRHFRRLRSRPKTDEENAQHILWHYQILDPDSDIVAYWNKVFLIASLLALFIDPLYFFLPTVGGPACLQANRSLGRFLNVLRSFADLFYLLHMIMKFRTAFVAPNSRIFGRGDLIMDPWEIASRYLRSDFVIDLAATIPLPQIVIWLVIPASRTGTDHTNNTLALFILIQYIPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKMQCHDENKSHRLSCLPSYLDCNSLDLPERQYWLNITRVVSKCDAKSKINIKYKFGMFADAFLNDVVSSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLVETCFCIILCIAGLVLFSLLIGNFQTYLSSMSIRLEEWRIRKRDTEEWMRHRQLPQDLQARVRRFVQYKWLATRGVNEEALLLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFREGDPVDEMLFIIRGQLESSTTNGGKYGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRFYSHQWRTWGCCFIQVAWRRYQKRKASRELSLRERLYMAEPATQNDYYMGRYESEDYEDTVGESSSADGKKVQNLGATVLASRFATNTKKGNHKLQGGDPVPQLFKPDEPDFSMDHDDV* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1923 695 SUPERFAMILY cAMP-binding domain-like 377 572 IPR018490 -
Lja1g1923 695 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 26 691 - -
Lja1g1923 695 SMART cnmp_10 447 578 IPR000595 -
Lja1g1923 695 SUPERFAMILY Voltage-gated potassium channels 40 369 - -
Lja1g1923 695 MobiDBLite consensus disorder prediction 664 695 - -
Lja1g1923 695 CDD CAP_ED 447 578 IPR000595 -
Lja1g1923 695 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 691 - -
Lja1g1923 695 Pfam Cyclic nucleotide-binding domain 470 558 IPR000595 -
Lja1g1923 695 Pfam Ion transport protein 48 372 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g1923 695 Gene3D - 52 371 - -
Lja1g1923 695 Gene3D Jelly Rolls 445 565 IPR014710 -
Lja1g1923 695 ProSiteProfiles cAMP/cGMP binding motif profile. 447 577 IPR000595 -
Lja1g1923 695 Gene3D Helix hairpin bin 375 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1923 Lja-Chr1 22016960 22021369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1923 32 695 Ion Channels AT5G14870 66.618 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1923 K05391 - gmx:100802812 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1923 1 22016960 22021369 Lja1g1923 1 22016960 22021369 ECH