Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1919 ATGGCTCTTACACTTCAAAGTGCATTCTCCCACCTACTCATCCTTCTAGGTGTACTCTCAATATTCCTAGTGACCCCTACCGCTTGTTTTAATCCCAAAAAGCTTGTTAATGTTTCATACTCCTCATATTCTGGTTCAGATTGGTCTCCTGCATTGGCCACTTGGTATGGACCTTCCAATGGTGACGGAAGTGAAGGTGGTGCTTGCGGATATGCTGAGGCTGTTGGGCAAGCTCCATTCTCATCATTGGTATCAGCCGGAAGCCCTCTTATATATGACAAGGGCGAAGGTTGCGGTTCTTGTTATGAGGTGAAGTGCACAGATTATTCTGCTTGTTCAGGCAACCCTGTGAGAGTAGTGATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTGATTATCATTTTGATTTGAGTGGAATGGCTTTTGGTTCCATGGCAGTTTCAGGTCAAGATGAGGAGCTACGAAATGCTGGAAAAATAAACATTCAACATAGAAGAGTTGAATGCAACTATCCTGGTAGGTCCATAGCTTTTCACGTGGACTCAGGTTCCAATCAACAATATTTTGCTATCTTGATTGAGTATGAGGATGGGGATGGTGATCTTGCTAGTGTTGAACTCAAGGAAGCTTTAGACTCAGATTCATGGGATTCCATGCAACAATCATGGGGTGCAGTTTGGAAGTTTGATAAAGGCTCACCACTGGAAGCACCATTCTCTATCAAGCTAACCACACTTGAGTCCGGCAAGACTATCGTGGCAAACAATGTGATCCCAGCAAATTGGACGCCTGGTCAAACATACAGATCAATAGTGAACTTTGCAGTCTAG 834 0.4448 MALTLQSAFSHLLILLGVLSIFLVTPTACFNPKKLVNVSYSSYSGSDWSPALATWYGPSNGDGSEGGACGYAEAVGQAPFSSLVSAGSPLIYDKGEGCGSCYEVKCTDYSACSGNPVRVVITDECAGCGSDADYHFDLSGMAFGSMAVSGQDEELRNAGKINIQHRRVECNYPGRSIAFHVDSGSNQQYFAILIEYEDGDGDLASVELKEALDSDSWDSMQQSWGAVWKFDKGSPLEAPFSIKLTTLESGKTIVANNVIPANWTPGQTYRSIVNFAV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1919 277 Gene3D - 172 276 IPR036749 -
Lja1g1919 277 Gene3D - 32 171 IPR036908 -
Lja1g1919 277 Pfam Lytic transglycolase 85 164 IPR009009 -
Lja1g1919 277 SUPERFAMILY Barwin-like endoglucanases 36 174 IPR036908 -
Lja1g1919 277 PANTHER EXPANSIN-B3 18 277 - -
Lja1g1919 277 SUPERFAMILY PHL pollen allergen 175 271 IPR036749 -
Lja1g1919 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Lja1g1919 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 271 IPR007117 -
Lja1g1919 277 SMART dpbb_1 84 165 IPR007112 -
Lja1g1919 277 Pfam Expansin C-terminal domain 177 260 IPR007117 -
Lja1g1919 277 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Lja1g1919 277 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Lja1g1919 277 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Lja1g1919 277 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Lja1g1919 277 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Lja1g1919 277 PRINTS Major pollen allergen Lol pI signature 226 243 IPR005795 GO:0005576|GO:0019953
Lja1g1919 277 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Lja1g1919 277 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Lja1g1919 277 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Lja1g1919 277 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Lja1g1919 277 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Lja1g1919 277 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Lja1g1919 277 PANTHER EXPANSIN-B2-RELATED 18 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1919 Lja-Chr1 21958248 21960233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1919 27 275 Expansin Gene Family AT1G65680 61.044 1.46e-113 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1919 - - gmx:548090 481.1