Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1916 ATGGCTGCAATACCCACTCACATCAAAGCCTGGGCCTACTCAGAACATGGCAAGAGCGTTGATGTTCTCAAGTTTGATCCCAACTTGCCTTTACCTGAGTTGAAGGAGGATCAAGTCCTCATCAAGGTTGCTGCTGCATCCCTTAATCCCATTGATTACAAGAGAATGGAAGGGGCGTTTAAGGCCTCAGATTCCCCTTTACCAACTGCTCCAGGGTACGATGTTGCTGGAGTGGTGGTTAAGGTGGGGAGTGAGGTGAAGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAGCAAGCTATGGTATATCCAAAGGTGGTTGGTTCATTGGCTGAGTATACAGCTGCAGAAGAGAAACTGTTGTCACACAAACCGCAGAATCTGAGCTTTGCTGAGGCTGCTAGCCTTCCTTTGACAATTGAGACTGCTTATAATGGCCTTGAATTAGCTGGCTTTTCTGCTGGGAAATCTATACTTGTGCTTGGAGGTGCTGGTGGAGTTGGAACCCTCATTATTCAGCTGGCAAAGCATGTTTATGGCGCATCTAAGATTGCAGCTACATCCAGCACTGGGAAACTAGAATTGTTGAGGAAGTTGGGAGCTGACACGCCTATTGATTATACAAAGGAGAACTTTGAAGACCTTCCTGAAAAGTTTGATGTTGTGTATGATACAGTGGGTCAGACTGAGAGTGCATTCAAGGTTCTAAAAGAAGGAGGCAAAGTTGTGACAATAGTACCACCTGGACTTCCACCAGCAATCTTTTTCGTGCTCACTTCTGATGGGGCTGTCTTAGAGAAACTGAGACCTTTCTTGGAAAGCGGCAAGGTAAAGCCAATACTTGATCCCAAGAGCCCGTTTCCATTTTCGCAAACTGTGGAAGCATTTTCATATCTGGAAACAGGCAGAGCCACTGGAAAAGTAACACTCACTCTTCAATTCTTCATCTCTTATTTCTCTCTCTTCAATTCTTCACTCTTTTCAAGCATGGCAGCAATACCCACTCACATCAAAGCATGGACCTACTCAGAATACGGCAAGAGCACTGATATTCTTAAGTTCGATCCAAACGTGCCTTTACCTGAGTTGAAGGAGGATCATGTCCTCATCAAGGTCGTTGCTGCAGCCCTTAATCCCATTGATTATAAGAGAATGGAAGCTTTGTTTAAGGACACAGATTCCCCTTTACCCACAGCTCCAGGGTATGATGTTGCTGGAGTGGTGGTTAAGGTTGGAAGTGAAGTGAAGAAATTTAAAGTTGGAGATGAAGTTTATGGTGATATCAATGAGAATGCTCTGGAGTATCCAAAGGTTGTTGGTTCATTGGCAGAGTATACAGCTGTAGAAGAGAAATTGTTGGCTCACAAGCCTAAGAATCTGAGCTTTGTTGAGGCAGCTAGTCTTCCTTTAGCAATTGAGACTGCTTATGAAGGCCTTGAGCGTGCTGGGTTTTCTGCTGGGAAATCTATTCTTGTGCTTGGAGGTGCTGGTGGAGTTGGAACCCACGTTATTCAGCTTGCCAAGCATGTTTTTGGCGCATCTAAGGTAGCAGCTACATCTAGCACTGGGAAGCTGGAGCTGTTGAGGAAGTTAGGAGCTGACATGCCTATTGATTATACAAAGGAGAACGTTGAAAACCTGCCTGAAAAGTTTGATGTGGTGTTTGATGCAGTTGGGGACGCTGACACGACATTCAAGCCTTTGAAAGAAGGAGGCAAATTTGTGACAATAGTACCACCTGGACTTCCACCACCGGCAATCTATTACATATTGAAATCTGATGGGGCTGTCTTAGAGAAACTAAAACCGTATTTGGAAAGTGGCAAGGTAAAGCCAATACTTGATCCCAAGAGTCCCTTTCCATTTTCCCAAACTGTTGAAGCATTTTCCTATCTGGAAACTAACAGAGCCGTTGGAAAAGTGGTCATCCATCCCATACCATGA 1953 0.445 MAAIPTHIKAWAYSEHGKSVDVLKFDPNLPLPELKEDQVLIKVAAASLNPIDYKRMEGAFKASDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINEQAMVYPKVVGSLAEYTAAEEKLLSHKPQNLSFAEAASLPLTIETAYNGLELAGFSAGKSILVLGGAGGVGTLIIQLAKHVYGASKIAATSSTGKLELLRKLGADTPIDYTKENFEDLPEKFDVVYDTVGQTESAFKVLKEGGKVVTIVPPGLPPAIFFVLTSDGAVLEKLRPFLESGKVKPILDPKSPFPFSQTVEAFSYLETGRATGKVTLTLQFFISYFSLFNSSLFSSMAAIPTHIKAWTYSEYGKSTDILKFDPNVPLPELKEDHVLIKVVAAALNPIDYKRMEALFKDTDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINENALEYPKVVGSLAEYTAVEEKLLAHKPKNLSFVEAASLPLAIETAYEGLERAGFSAGKSILVLGGAGGVGTHVIQLAKHVFGASKVAATSSTGKLELLRKLGADMPIDYTKENVENLPEKFDVVFDAVGDADTTFKPLKEGGKFVTIVPPGLPPPAIYYILKSDGAVLEKLKPYLESGKVKPILDPKSPFPFSQTVEAFSYLETNRAVGKVVIHPIP* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1916 650 SMART PKS_ER_names_mod 350 646 IPR020843 GO:0016491
Lja1g1916 650 SMART PKS_ER_names_mod 18 313 IPR020843 GO:0016491
Lja1g1916 650 Pfam Alcohol dehydrogenase GroES-like domain 37 99 IPR013154 -
Lja1g1916 650 Pfam Alcohol dehydrogenase GroES-like domain 369 431 IPR013154 -
Lja1g1916 650 SUPERFAMILY GroES-like 337 497 IPR011032 -
Lja1g1916 650 Gene3D - 150 264 - -
Lja1g1916 650 Gene3D - 482 597 - -
Lja1g1916 650 CDD MDR_like_2 9 313 - -
Lja1g1916 650 Pfam Zinc-binding dehydrogenase 534 646 - -
Lja1g1916 650 Pfam Zinc-binding dehydrogenase 202 311 - -
Lja1g1916 650 CDD MDR_like_2 341 646 - -
Lja1g1916 650 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 463 589 IPR036291 -
Lja1g1916 650 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 332 650 - -
Lja1g1916 650 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 490 511 IPR002364 GO:0008270|GO:0016491
Lja1g1916 650 Gene3D - 15 311 - -
Lja1g1916 650 Gene3D - 347 646 - -
Lja1g1916 650 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 3 313 - -
Lja1g1916 650 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 313 IPR044626 GO:0016628
Lja1g1916 650 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 332 650 IPR044626 GO:0016628
Lja1g1916 650 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 283 IPR036291 -
Lja1g1916 650 SUPERFAMILY GroES-like 5 165 IPR011032 -
Lja1g1916 650 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 158 179 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1916 Lja-Chr1 21924887 21933597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1916 33 254 Monolignol Biosynthesis Gene Families AT4G37990 25.794 2.72e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1916 K18980 - gmx:100817947 496.893