Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1915 ATGGATTGCAGAATTGTTGAGAGCGCAGAAACTCGCAGGAACAAGTGTGCAGCATGCTTCAGGCAGTTCAACAGAATAGAGCACCTTGTGGAGCACATGAGGATCTCATACCATTCTGTTCATGAACCAGTCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTCAGGGAGCATCTTATAGGTCCATTGCCAAAACAGGAGTGCAGAGACATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAATCCTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAACTCTCTGGAATAAATGGAATAATTGGTCGCTTCTCAAACTTGGGTGTTCGTGACAATTTGACAATTGGTGGTGGAACAAGGGGACCACAAGTAGTTGCACTTGCCTGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTTTGTGCAAGAGTCTGCTTAATTGATGAGAGGGAGAACATCATCTTCCACTCTTACGTCAAGCCACTCCTTCCTATTACAAACTATAGGTATGAGACAACTGGCATTAGACCAGAATCCTTGAGGGATGCAATGCCTCTGAGACAGGTTCAGAGGAAGATCCAAGACTTCGTTTGCAATGGGGAACCAATATGGACAATTCGAGCAAGAGGTGGAAAAGCTAGGACTCTTGTGGGTCATGGTTTAGATCATGACCTTGCATGCTTGCAAATTGAATATCGAGGAGAAAAAATAAGGGACACTGCGAAATACCCTCCACTGATGAAAACAAGCAAGCTTAGCAACTCACTCAAGTACTTAACACAAGCATATCTAGGGTATGACATTCAAAGTGGGATACAAGATCCTTATGAAGATTGTGTTGCAACAATGAGGCTGTACATGAGAATGAGATCCCAAGTGCACAAAATGGAGGATAACCCTTTGGCAACTGACCCACAGAACAGGAATAATTTTGCTTCATGGAGGCAAAGTGAACTTGAAAGAATGAGTCCAGAACAAATGATGGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTAA 1059 0.4429 MDCRIVESAETRRNKCAACFRQFNRIEHLVEHMRISYHSVHEPVCGICRKHCRSFESLREHLIGPLPKQECRDIFANRGCKFCLKILDSPNSRRIHQEKCQLSGINGIIGRFSNLGVRDNLTIGGGTRGPQVVALACKMVGGGSDGSLDLCARVCLIDERENIIFHSYVKPLLPITNYRYETTGIRPESLRDAMPLRQVQRKIQDFVCNGEPIWTIRARGGKARTLVGHGLDHDLACLQIEYRGEKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQSGIQDPYEDCVATMRLYMRMRSQVHKMEDNPLATDPQNRNNFASWRQSELERMSPEQMMEISRSDYYCWCLDS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1915 352 Pfam Exonuclease 152 294 IPR013520 -
Lja1g1915 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 43 IPR013087 -
Lja1g1915 352 SMART exoiiiendus 131 305 IPR013520 -
Lja1g1915 352 CDD REX4_like 133 296 IPR037431 GO:0006364|GO:0008408
Lja1g1915 352 ProSitePatterns Zinc finger C2H2 type domain signature. 16 38 IPR013087 -
Lja1g1915 352 Gene3D - 129 318 IPR036397 GO:0003676
Lja1g1915 352 Gene3D Classic Zinc Finger 4 64 - -
Lja1g1915 352 PANTHER OS02G0709000 PROTEIN 7 352 - -
Lja1g1915 352 SUPERFAMILY Ribonuclease H-like 145 303 IPR012337 -
Lja1g1915 352 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 7 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1915 Lja-Chr1 21909872 21913439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1915 6 352 C2H2 Transcription Factor Family AT3G27970 74.785 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1915 - - aprc:113862359 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1915 1 21909872 21913439 Lja1g1915 1 21909872 21913439 ECH