Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1913 ATGTTCCCACTGCAATTCACCACCCATTCTCCTCATCCTCCATCCTCATTGCTGAGCAGCATCAACAGCTCATCCTTCTGCCCCACGCCTCGCTTCCTCTTCAATCCCTACATCAACAACAGTAACAGCAAGCATTGCTTTCTTCGCTCTAATGGCGGAAGCCTCAATCTTAGGGTTTTCGCTATGTCTGATAATTCCAAATTCAAGATGAATCTCAATGAGTACCTCGTCACTCTTGACAAGCCCCTTGGCCTCCGGTTCGCTCTCACCGCCGATGGCAAAATCATCGTCCATTCTATCACCAAAGGGGGTAATGCTGAGAGATCAAGGATAATTATGGTGGGTGACACTTTGAAGAAAGCTGGTGATTCGTCTCAGAACAGTCTTGTTGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTACAGGAGCAAACAAATTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCGTCCAACTACTGCAGAAGATGAATGATCTTGAAATATTGTTTAATAGAGGTCGAGTTCCTATTCTCACATGGAACAGGACACTATTGGCATCAAATTTACAACCATCTAGTGAGAGCTGTGGGAATTCTGGATTTGTGATGTTCAGCTCAAAGTTTCTTAAATCCAAAGGAAGCAAGTTATTGGGCAATCAAAACCAACATGCCATCACTCATGGTGAGAGAAATTTCCTTAGCGAACACACAACACAACTTGCTTGTATTTTTACTGAAGAAGCATGTGGAGATGGAGACTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCCCTGGATCGTTCCAAGCATGAGATGTACTATAATCACTCCCTTGGTATGCGTTATAGTAAGATTACAGAGCAAATATTTGTGGGATCCTGTATACAAACAGAAGATGATGTGGAAACCTTATCAAAAGTTGAGGGAGTTACTGCTGTGTTGAACTTCCAAAGTGGAGCTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAACGACGCTTCTCAAAAGAATAATATTCTCATGATCAACTATCCCATACGGGAGGGAGATTCTTATGATATGAGGAAAAAACTGCCATTTTGCGTGGGGCTTTTACTACGGTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACGTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATACTTACATTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGGCCTGACAGGCCCGCAATTGCATGGGCGACATGGGATCTTATAGCTATGGTTGAAAGCGGCACACACGATGGACCTCCAACACATGCCGTCACATTTGTGTGGAATGGTCATGAGGGAGAGGGTGTAACTTTGGTTGGAGACTTTACTGGAAATTGGAAAGAACCACTCAGGGCAAAGCACCAGGGTGGATCAAGAAATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAACATTCAACTGCTTCACCAGCAGAAAGGGATGATAGCGGAAATGTTAACAATATAATTGTGATTGGTGAAACCGCCAACGTTCGGCCTTTTGTACAACACCAGCAGAAAGATGCCAACATTGTGAAGGTGATAGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTATCAGATTAGCTCCCAAATAA 1770 0.4316 MFPLQFTTHSPHPPSSLLSSINSSSFCPTPRFLFNPYINNSNSKHCFLRSNGGSLNLRVFAMSDNSKFKMNLNEYLVTLDKPLGLRFALTADGKIIVHSITKGGNAERSRIIMVGDTLKKAGDSSQNSLVEIKDVGDTQKVLQEQTNSFSLVLERPTSPFPVQLLQKMNDLEILFNRGRVPILTWNRTLLASNLQPSSESCGNSGFVMFSSKFLKSKGSKLLGNQNQHAITHGERNFLSEHTTQLACIFTEEACGDGDWAHGSFPLEEYIQALDRSKHEMYYNHSLGMRYSKITEQIFVGSCIQTEDDVETLSKVEGVTAVLNFQSGAEAENWGINVKSINDASQKNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVESGTHDGPPTHAVTFVWNGHEGEGVTLVGDFTGNWKEPLRAKHQGGSRNEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDSGNVNNIIVIGETANVRPFVQHQQKDANIVKVIERPLNEKERFMLAKAARCIAFSICPIRLAPK* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1913 589 Pfam Dual specificity phosphatase, catalytic domain 312 419 IPR000340 GO:0008138|GO:0016311
Lja1g1913 589 Gene3D Protein tyrosine phosphatase superfamily 282 546 IPR029021 -
Lja1g1913 589 Gene3D Immunoglobulins 443 539 IPR013783 -
Lja1g1913 589 CDD DSP_laforin-like 288 434 IPR045204 GO:0019203|GO:0046838
Lja1g1913 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 49 589 - -
Lja1g1913 589 Pfam Glycogen recognition site of AMP-activated protein kinase 456 538 IPR032640 -
Lja1g1913 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 279 422 IPR029021 -
Lja1g1913 589 SUPERFAMILY E set domains 453 536 IPR014756 -
Lja1g1913 589 ProSiteProfiles PDZ domain profile. 76 157 IPR001478 GO:0005515
Lja1g1913 589 CDD E_set_AMPKbeta_like_N 456 535 - -
Lja1g1913 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 49 589 IPR030066 GO:0005983
Lja1g1913 589 SUPERFAMILY PDZ domain-like 81 170 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1913 Lja-Chr1 21885938 21893263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1913 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 68.597 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1913 - - gmx:100814503 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1913 1 21885938 21893263 Lja1g1913 1 21885938 21893263 ECH