Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1910 ATGGCTCTGCTACCATCATCTTCCTCCTCTACATTCAACTACGATGTGCTCCTCAGCTGTGGTACTGAAGATACCCAAGGATTCACTGTCGGCATCTACAGAGCCCTTTGCGACGAGAAAGTCCACACCTTCTTTGATTACAAGGTGGTTGACGAAATGGTACCAGAAGTTGACGAAGCCATTCAATGCTCCAGAGTTGCTATCATTGTGCTATCTAAGAACTATGCATCATCTTCCATTTGCTTAGATAAGCTTTCCAAGATCCTTGACTTCTTCAACGCCAACGGTAGACTCAGTCTGGTTCTTCCTGTTTTTTATCACGTGGATCCCAATGATGAAGCCATGGCTGTGCATCACAAGAGCTTCCAGGATGACATGGACACGTCGCAGCTCCAGAAATGGACCATGGTTATGCAGCAAGTTGTGGACTTGCCCAGTTTGCATTTCAGACTTGGGGAAGATCATTATCATGATTTTATTTGGGAGATAGTTAAAGAGGTTTTCAACAAGATTATAAACGACGTCCCTTCACGAGTTCAGGACAGCCTTGTTGGAATGGAGTCCCGAGTGCCAAAAGTAATCAGGCTTTTAGATCTTCAGTCTGGTGTTGGAGTCCATATGGTAGGAATCACTGGAATTGGGGGAATAGGCAAAACAGCACTTGCTCGGGAAGTTCTTAATTTGATAGCTGACCAATTTGAAGTTGCGTGTTTTCTTCGTAATGTGAAGAAGGAGTTAAACAAACATGGATTAAGCCACTGCCCCAATGAGAGATTTCTTTATCATATACCTGGAGAAGATGAGGAAGGTGTTCAGATTACATATTTTTCGGATGCAATTGAGGAAATAAGACGCAAGCTATGTAGAAAGAAGGTTTTATTGATTGTAGATGATGTTGACAAACTGGAGCAGTTGGAGGCTTTGGCTGAAAGTCCTAATTGGTTCTGTCCTGGTAGTAGAATTATCACTACCACTCGAAACAAGCATTTGCTAGTAAGTCATGGGATTGAAAGAATATATGAAGTGAGTGAGTTAAATTGCAAAGAAGCACTTGATTTGTTGACCTGGAGTGTTTTCAAGAATAACATAGCTCCTTCAGAGTACAAGGAGGCCCTAAATTATGCAGTCACTTTAGCTTTGGGCCTTCCATTGTCTTTGATAGTGATAGGTTCCTACTTGTGTGAGTTAAGTGTGTTAGAATGGAAACATTACTTACGAAGTTGGAAAGAGTTTCCTGATGAAACAGTCCAAGCAGCACTAGAAGTAAGCTTTGATGCTTTGAAGGTTATGGAGAAATGCGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATCCACTGGTTGAGGTTCAATATATACTTCGTGCTCACTATCGTCACTGCATGGCAGGTTACATCCGTGCATTGGTTAGTAAATCTCTCATAAACATTAGTTCAAGTGGTGAGCTAACATTACATGAATTGATGCGGAATATGGGTAGACAAATTGTTCGACGACAATCACCTTGGCAAAGAAGTAGGTTATGGATCTTTGAAGATATACGTGAAATTTTGCAAGGTTGTATGGGAACCAACAAAATTAAAATCATCTGCCTGGATTTTTCCCCAACTGAAGAAGGCACAATAAGCTGGGACGGAGAGGGCTTCAAGAACATGGGAAATCTGAAGATACTTATTATTAAAAATGTTCATTTTTCTGAAGCTCCCAAATATCTTCCGAGTAGTTTGAGAGTATTGGACTGGCAGAGCTATCCTTCACAGTATTTACCTCCTAATTTTTATCCTGGGAATCTTTCTATATGTAAGTTACCCAAGTGTTGCTTTGTGTCATCTGAGATATGTGGCTTGTTGAATAAGAAGCCTGTGAATTTGGACGATTTGAGTTTTGACAATGGTGAACATTCATCTAATGAGATGGTTTATGTGTCTTGTCTGCCAAAATCAAAAGAAATAACTGTTATGGTCTCAGAATAA 1974 0.4048 MALLPSSSSSTFNYDVLLSCGTEDTQGFTVGIYRALCDEKVHTFFDYKVVDEMVPEVDEAIQCSRVAIIVLSKNYASSSICLDKLSKILDFFNANGRLSLVLPVFYHVDPNDEAMAVHHKSFQDDMDTSQLQKWTMVMQQVVDLPSLHFRLGEDHYHDFIWEIVKEVFNKIINDVPSRVQDSLVGMESRVPKVIRLLDLQSGVGVHMVGITGIGGIGKTALAREVLNLIADQFEVACFLRNVKKELNKHGLSHCPNERFLYHIPGEDEEGVQITYFSDAIEEIRRKLCRKKVLLIVDDVDKLEQLEALAESPNWFCPGSRIITTTRNKHLLVSHGIERIYEVSELNCKEALDLLTWSVFKNNIAPSEYKEALNYAVTLALGLPLSLIVIGSYLCELSVLEWKHYLRSWKEFPDETVQAALEVSFDALKVMEKCVFLDIACCFKGYPLVEVQYILRAHYRHCMAGYIRALVSKSLINISSSGELTLHELMRNMGRQIVRRQSPWQRSRLWIFEDIREILQGCMGTNKIKIICLDFSPTEEGTISWDGEGFKNMGNLKILIIKNVHFSEAPKYLPSSLRVLDWQSYPSQYLPPNFYPGNLSICKLPKCCFVSSEICGLLNKKPVNLDDLSFDNGEHSSNEMVYVSCLPKSKEITVMVSE* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1910 657 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 631 IPR044974 GO:0006952
Lja1g1910 657 Gene3D - 172 338 IPR027417 -
Lja1g1910 657 PRINTS Disease resistance protein signature 550 566 - -
Lja1g1910 657 PRINTS Disease resistance protein signature 207 222 - -
Lja1g1910 657 PRINTS Disease resistance protein signature 379 393 - -
Lja1g1910 657 PRINTS Disease resistance protein signature 286 300 - -
Lja1g1910 657 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 143 IPR035897 -
Lja1g1910 657 SMART till_3 13 147 IPR000157 GO:0007165
Lja1g1910 657 SMART AAA_5 204 345 IPR003593 -
Lja1g1910 657 Pfam NB-ARC domain 187 421 IPR002182 GO:0043531
Lja1g1910 657 SUPERFAMILY "Winged helix" DNA-binding domain 416 518 IPR036390 -
Lja1g1910 657 Gene3D - 6 171 IPR035897 -
Lja1g1910 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 438 IPR027417 -
Lja1g1910 657 Gene3D - 344 428 IPR042197 -
Lja1g1910 657 Pfam TIR domain 14 185 IPR000157 GO:0007165
Lja1g1910 657 ProSiteProfiles TIR domain profile. 12 142 IPR000157 GO:0007165
Lja1g1910 657 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1910 Lja-Chr1 21859098 21861855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1910 9 607 WRKY Transcription Factor Family AT4G12020 29.316 2.79e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1910 - - lja:Lj1g3v3642040.2 880.552