LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1909	ATGCATTATTTTTATTTTATTTTATGCCAGAAAAAGCCATCACGAAGAGATCAAGTTCTCTTTCTCCTCCTCCCCCTCTTGTTCCATTGTTTTTGTTTGTTCAAATTTCTTTCTTCATTTCTGTTGCATGCATATATGGCTCTGCAACCATTGTCTTCCTCCTCTACCAGACCTAGTGGATTCAAATACGACGTGCTCCTCATCTGTGGGGTTGGGGGGACTGAAGATGAAGAAGATGTCCGTGAATTGACTGACCTTCTCTACGGATACCTTGGTCCCGCGGAACTCCGCACATTCAGATTCACATTCACTGATCACGAAGCAATACTTGAGGAGCTCATTCAAATTTCTAGGATGGCTATCGTTGTCATCTCTAACAACTTTGCATCATCTTCGTATTGCTTAGATAACCTTTCCAATATCCTTGACTACTTCGACGCCAACGGTAGACTCAGACAGCTTCTTCCGGTTTTTCATCACGTGGATCCCGATGATGTAGCCAAGGGTGTGCATCTCAAGAGTTTCAAGGATGACCACGTCGATAGGTTGCAGCTGCAGAAATGGACCCTGGCTTTGCAGCAACTTGCTAACTTGCCTGATCACTTTCATTTCGGACTCGAGGATGAATATTATGGTGGCGAGATATTTGAAAAGGCTCTGGCCAAGGTTATAAGCGACGATTTCAAACCTTTACGAGTTCAGGACAACCTTGTTGGAATGGTGTCCCGAGTGCCAAAAGTAATCAAGCTTTTAGACCTTCAATCTGGTGGCGGAGTCCATATGGTAGGTATCACTGGAATTGTGGGAATAGGAAAAACAACACTTGCTCGGGAAGTTCTAAATTTGATAGCTGACCAATTTGAAGTTGTGTGTTTTCTTCGCAATGTGAGTAATGATATAAACCTATGTAGAATAAGCCGCCGCCACGACCACTATGACAGATTTCTTTATTTTATACCTGGAAAAGATGAGGAATGTGTTCGGTTTATATATTTTTTCGAAGCAATTAAGGATATATGCAGTAGGCTCTGTGAAAAGAAGGTTTTATTGATTGTGGATGATGTTGATAAACTGAAGCAGTTGCAGACTTTGGCAAATATTACTGATTGGTTCAGTCCTGGTAGTAGAATTATCACTACCAGTCGAGACAAACATTTGCTAGTAAGTCATGGCATTGAAAGAATATATGAAGTGAGTGATTTAAATGACGAAGAAGCACTTGATTTATTGACCTGGACTGTTTTCAAGGATAAAATAGCTCCTTCAGAGTGCAAGGAGGGCCTAAATTATGCAGTAACTTTAGCTTCGGGCCTTCCATTGTCTTTGATAGAGCTAGGTTCCCACTTGTGTGAGTTAAGTATGTTAGAATGGAAATATTACTTACGAAGTTGGAAAGAGAGTCCTGATGAAACAATCCAAGCAGTACTAGAATTAAGCTTAGATGGTTTGGTGGCTATGGAGAAAAACATTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATCCACTGGTTGAGGTTCAACATATACTTCGTGCTCATTATAGAGAGTGTGTGACAGATTACATCAGTGCATTGGTTAGTAAATTTCTCATAAACATCAGTTCAAGTGGTGAGCTAACATTACATGAATGGATGCGGAATATGGGTAAAGAAATTGTTCGGCGAAAATCATCAAGAATGCCTTGTGTAAGTAGTAGGTTATGGATCCTTCAAGACATACGTCAAGTTTTGGAAGATTGTACGGGAACCCACAAAATTAGAACCATATGCCTGGATTTATCCTCAACTGAAGAAGGCACAATAAGCTGGGATGGAAAGGGCTTCAAGAACATGGAAAATCTCAAGACACTTATTATTAAAAATGTTCATTTTTCTGAAGCTCCCAAATATCTCCCGAGTAGTTTGAGAGTATTGGACTGGCAGAGCTATCCTTCACAGTATTTACCTCCTAATTTTTATCCTGGGAATCTTTCTATATGTAAGTTACCCAAGTGTTGCTTTGTGTCATCTGAGATATGTGGCTTGTTGAATAAGAAGCCTGTGAATTTGGACAATTTGAGTTTTGACAATGGTGAACATTCATCTAATGAGATGGTTTATGTATCTTGTCTTCCAAATTCAAGAGAAATGACTGTTATGGTCTCAGAATAA	2151	0.398	MHYFYFILCQKKPSRRDQVLFLLLPLLFHCFCLFKFLSSFLLHAYMALQPLSSSSTRPSGFKYDVLLICGVGGTEDEEDVRELTDLLYGYLGPAELRTFRFTFTDHEAILEELIQISRMAIVVISNNFASSSYCLDNLSNILDYFDANGRLRQLLPVFHHVDPDDVAKGVHLKSFKDDHVDRLQLQKWTLALQQLANLPDHFHFGLEDEYYGGEIFEKALAKVISDDFKPLRVQDNLVGMVSRVPKVIKLLDLQSGGGVHMVGITGIVGIGKTTLAREVLNLIADQFEVVCFLRNVSNDINLCRISRRHDHYDRFLYFIPGKDEECVRFIYFFEAIKDICSRLCEKKVLLIVDDVDKLKQLQTLANITDWFSPGSRIITTSRDKHLLVSHGIERIYEVSDLNDEEALDLLTWTVFKDKIAPSECKEGLNYAVTLASGLPLSLIELGSHLCELSMLEWKYYLRSWKESPDETIQAVLELSLDGLVAMEKNIFLDIACCFKGYPLVEVQHILRAHYRECVTDYISALVSKFLINISSSGELTLHEWMRNMGKEIVRRKSSRMPCVSSRLWILQDIRQVLEDCTGTHKIRTICLDLSSTEEGTISWDGKGFKNMENLKTLIIKNVHFSEAPKYLPSSLRVLDWQSYPSQYLPPNFYPGNLSICKLPKCCFVSSEICGLLNKKPVNLDNLSFDNGEHSSNEMVYVSCLPNSREMTVMVSE*	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1909	716	SUPERFAMILY	Toll/Interleukin receptor TIR domain	52	199	IPR035897	-
	Lja1g1909	716	Gene3D	-	228	393	IPR027417	-
	Lja1g1909	716	Gene3D	-	400	490	IPR042197	-
	Lja1g1909	716	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	108	690	-	-
	Lja1g1909	716	Gene3D	-	61	227	IPR035897	-
	Lja1g1909	716	PRINTS	Disease resistance protein signature	609	625	-	-
	Lja1g1909	716	PRINTS	Disease resistance protein signature	342	356	-	-
	Lja1g1909	716	PRINTS	Disease resistance protein signature	435	449	-	-
	Lja1g1909	716	PRINTS	Disease resistance protein signature	261	276	-	-
	Lja1g1909	716	Pfam	TIR domain	109	196	IPR000157	GO:0007165
	Lja1g1909	716	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	108	690	IPR044974	GO:0006952
	Lja1g1909	716	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	229	494	IPR027417	-
	Lja1g1909	716	Pfam	NB-ARC domain	244	474	IPR002182	GO:0043531
	Lja1g1909	716	CDD	AAA	238	383	-	-
	Lja1g1909	716	SMART	AAA_5	258	401	IPR003593	-
	Lja1g1909	716	ProSiteProfiles	TIR domain profile.	61	224	IPR000157	GO:0007165
	Lja1g1909	716	SUPERFAMILY	"Winged helix" DNA-binding domain	471	578	IPR036390	-
	Lja1g1909	716	Gene3D	Ribonuclease Inhibitor	570	709	IPR032675	-
	Lja1g1909	716	SMART	till_3	62	198	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1909	Lja-Chr1	21847539	21850893	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g1909	118	666	WRKY Transcription Factor Family	AT4G12020	29.715	8.16e-50	187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1909	-		-	lja:Lj1g3v3642040.2	1337.78