Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1904 ATGGTTCCCTTGCAAAAAATTTCTACTTTTTCACAACCTCCACCAAGTAACACCAACTTGTACCCAAACAATTCCCACCATTTTCAACATCATCCCTTTAATGGGGAAAACTATCACCCTGGTTTTGTTGTGGAAGTTCCTTCCTCCATCAACAAAATCTCAATGATCCCAACCCCTCATTCGATTGATTCATACCAGACTGCACTTATCAACGAGCCAATGAAAGACTTTTCCAACACCTGCTACCCCATTGCATTTGCACAGAATAAAAGCAAAATTGAAGCCATGCATGGTTGCCTTAACAATGGCAAGGGAATCTTGGATTTTCCCCAAAAAATCCCCTTTCAGTCTGGGGAATATTCACAACCTCAGATGGGCCCTTCTCTATCACCATCACTACTTTCACATGATTCGGCTCATATGAAGCCTAGGCTTCAAACTGAGGATTTAAGCATCATTGGAACTGCAAATTTCCAACAGGATATTGGTCAAAACGTTGTTGCTGGTGGTAGAATGCTACAGAAGAAGAGGCCAAAGAAGAGCAGTGAAATTCAGCACAAGGCAACTCCTAACATAATCAAAGGCCAATGGACTCCAAAGGAGGATGGGACTCTTATCGAATTGGTGAAACGCTTTGGGCTTAAGAAATGGTCTGAGATTGCTAAGCTACTGGGTGGCAGAATTGGAAAACAATGCAGAGAGAGATGGTACAATCATCTCCGAGAAAACATTAAGAAAGACTCATGGAATGAAGAGGAAGACAAAATACTCATTGATGCTCACAAGGAAGTTGGGAACAAGTGGGCAGAAATTGCAAGGAGATTGCCGGGGAGGACTGAGAACACTATCAAGAACCATTGGAATTCGACAAAGCGGCGTCTAAATGGCAAGAGACAAAAGAATAGGCGCAATGGTGGTGCTAAGGGAACATTGCTTCAGGACTATATTAAGGAACTCGTTGCAGCTGGACATGCTAAATTAAAGGAATCGAAGAAGTCCATGAAACAGGTGAATATGAGGAATGATTACAATAATCATGACAGTGGTCACATTCATATTCATTATGAGAATTCAGAGGGTGACTTTAGCTTTGAAGATGTGGCTACTCAAGATGAAGCCGGTGGGTATGTGCCAATGATGTTCAATGCTGATGAAATAGCAAGGGGGTCTGCAGTGGAACATATCACAATGGATTATGATGTTGCAACAGAGTTTGTGCCAGAGGTCCCAATGAAGAAGGAAATGGATATGATTGAGATGATCTATGGAAATCCTTATAGTGGTTACATGGATTGA 1296 0.419 MVPLQKISTFSQPPPSNTNLYPNNSHHFQHHPFNGENYHPGFVVEVPSSINKISMIPTPHSIDSYQTALINEPMKDFSNTCYPIAFAQNKSKIEAMHGCLNNGKGILDFPQKIPFQSGEYSQPQMGPSLSPSLLSHDSAHMKPRLQTEDLSIIGTANFQQDIGQNVVAGGRMLQKKRPKKSSEIQHKATPNIIKGQWTPKEDGTLIELVKRFGLKKWSEIAKLLGGRIGKQCRERWYNHLRENIKKDSWNEEEDKILIDAHKEVGNKWAEIARRLPGRTENTIKNHWNSTKRRLNGKRQKNRRNGGAKGTLLQDYIKELVAAGHAKLKESKKSMKQVNMRNDYNNHDSGHIHIHYENSEGDFSFEDVATQDEAGGYVPMMFNADEIARGSAVEHITMDYDVATEFVPEVPMKKEMDMIEMIYGNPYSGYMD* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1904 431 SUPERFAMILY Homeodomain-like 191 287 IPR009057 -
Lja1g1904 431 ProSiteProfiles Myb-like domain profile. 241 291 IPR001005 -
Lja1g1904 431 Gene3D - 248 309 - -
Lja1g1904 431 Gene3D - 193 245 - -
Lja1g1904 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 295 IPR017930 -
Lja1g1904 431 CDD SANT 248 291 IPR001005 -
Lja1g1904 431 PANTHER MYB PROTEIN-RELATED 150 346 - -
Lja1g1904 431 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g1904 431 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g1904 431 PANTHER MYB DOMAIN PROTEIN 100-RELATED 150 346 - -
Lja1g1904 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 244 IPR017930 -
Lja1g1904 431 CDD SANT 197 240 IPR001005 -
Lja1g1904 431 SMART sant 245 293 IPR001005 -
Lja1g1904 431 SMART sant 193 242 IPR001005 -
Lja1g1904 431 Pfam Myb-like DNA-binding domain 194 240 IPR001005 -
Lja1g1904 431 Pfam Myb-like DNA-binding domain 246 289 IPR001005 -
Lja1g1904 431 ProSiteProfiles Myb-like domain profile. 189 240 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1904 Lja-Chr1 21783633 21787321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1904 192 319 MYB Transcription Factor Family AT4G18770 65.625 1.09e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g1904 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1904 K09422 - mtr:MTR_4g088015 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1904 1 21783633 21787321 Lja1g1904 1 21783633 21787321 ECH
Lja1g1904 1 21783633 21787321 Lja2g1762 2 17922950 17925509 ECH