LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1900	ATGACTTGGTGTAAATTACTTTTATACAGTGCAGGGTTACAGAAGGGAGGAAAAATTCAGGCCTCATTGGGAAATGTTATGTATCGCAAATGGGCTCATAAATTTTCTGAGGGGAATGTATACGAGATAAATTTTTTTATTGTAATTGCTGCAAAGGGATCATATCGTGCTACTAATCATGCATATAGGATTCTTTTCAGCGGGAAAACAAAGGTTTTTCCATGTGATTGTAATGTTATACCAAATTGGGGCCTATCTTTGAAAATGTCAACGGAAGTCTCTTCAAGTGATGCTGAAACTGTGTATTTATGTGGTATCATTGGTTTGATCAATGCTGTGTCACCTGTTAGGGTTTGTAAGAAAGGTGTTGTAGATCTGAAGATAATGGTGATCCAGATATTGGATGAGATAGGTCAAGTTCCAATTGTTTTGCTTGGCCAATCTGCTGGTATTGTATCTGAGTACTTATCGAACCACCCCAATGAGAAGCCTGTTGTTGTTGTACAGTATGCAAAGCTTATTGAATTTCAAGGGCATAAGTTATTGCAGACATTAATACCTGTGTCTCAGATTTTCTTGAACCCTGACATTGAGGAGGTTACAATGTTTAGGACTAGGTTTTGTGGGAATGTGTCTCATTATGGTGGACCTATTTTGGAGTCATTCGATGCAGATGATTGTCATGCGAGATTTTATGATTTTGAAATAAGATATCCGAATAAGGATTTCCATTATGTGGATTGTGTGCCCTGTTTTTGTTTTTCTGTTGGAGAATATCAAGTTACTGAGTTAGAGCAGGATGTGTTAAAATGTGAAGAGGAAAGCTGTGATGGTTATCTCCGTGAATGTGAATTATTTGAACTGACGGAATCTCATTTTGTGTCTGTTTTGTGGCGGCAGACATTTTTTGAAAATTGTTGTGAAGGATTTCCATGTGAAGAGTTTGATGGTGTAGAAGATGTGGCGCTTTATTTTGAAAAGGAAGCAGTTGCAGGAGGAATTTAA	1005	0.3741	MTWCKLLLYSAGLQKGGKIQASLGNVMYRKWAHKFSEGNVYEINFFIVIAAKGSYRATNHAYRILFSGKTKVFPCDCNVIPNWGLSLKMSTEVSSSDAETVYLCGIIGLINAVSPVRVCKKGVVDLKIMVIQILDEIGQVPIVLLGQSAGIVSEYLSNHPNEKPVVVVQYAKLIEFQGHKLLQTLIPVSQIFLNPDIEEVTMFRTRFCGNVSHYGGPILESFDADDCHARFYDFEIRYPNKDFHYVDCVPCFCFSVGEYQVTELEQDVLKCEEESCDGYLRECELFELTESHFVSVLWRQTFFENCCEGFPCEEFDGVEDVALYFEKEAVAGGI*	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1900	334	Gene3D	-	80	214	IPR012340	-
	Lja1g1900	334	CDD	RPA1_DBD_B_like	106	207	-	-
	Lja1g1900	334	SUPERFAMILY	Nucleic acid-binding proteins	16	76	IPR012340	-
	Lja1g1900	334	SUPERFAMILY	Nucleic acid-binding proteins	102	207	IPR012340	-
	Lja1g1900	334	Pfam	Domain of unknown function DUF223	14	77	IPR003871	-
	Lja1g1900	334	Gene3D	-	13	76	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1900	Lja-Chr1	21750387	21753023	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g1900	16	222	Core DNA Replication Machinery Family	AT2G06510	23.005	2.04e-08	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1900	-		K07466	lja:Lj0g3v0101139.1	226.868