Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1898 ATGGCACCATGGCTTCTCTTATACACCATAGTTTTCTTCTTCTCATGGTGCTCATCACCCTCACTCTGTGACCCAAGAATCTCAGAAGCAGGACTCTACTGCGGCACAACGAGAGCACCATTGAAAGCTAACTTCATCCCAAGCTTTATCAAAGAAATGGAGAATCTCTCTCAGCTGGTAACTGACCACAACTGGGGCACTCACTCCGTCAACATCTCCGGCAGCATCCCCATCTACGGCTTCGCGCAGTGCTTCCACGACCTCTCCCACACTGACTGCCTCCTCTGCTACGCCGCCAGCCGGACCAGGCTCCCCCGCTGCCTCCCTTCCCTCTCTGCTCGTATCTACCTCGACGGCTGCTTCCTCCGCTACGACAACTACAGTTTCTACTCCGAGCGGACTGACCCTGCCAGGGATGCGGTGAACTGCAGCTCGAGGCGCGGCGCGGCAGGTGGCGGAGTGGAGAGGTTGAGGCTGGAGAGGAGTGTAGGGAAGGTTCTTGATGGAGTGGCTGTGAAGGCTGTGGCCAAGGGTGGTGGTTTTGCGGTGGGAGGAGGTGAGGGTGTTTATGCATTGGCGCAGTGCTGGAAAACGGTTAGCAATGAGGGGTGTAGAGATTGCTTGAGGAAAGCTGTGAAGGAGGTTAGAGGGTGCTTGCCTAATAGGGAAGGGAGGGCATTGAATGCTGGGTGTTATTTGAGATACTCAACTGAGAAGTTCTATAATGAAAAAGGTGGAGAGTCTGATAGTCAACATGGGTCTTTAAAAAGAGGAGCAATAATCGCAGCAGTTTTAGCTGCAGCTGCAGTTATATTGCTGACTTTCTCTGTCTCTTATGCAGCCTTCACAAAATTGTCAAAGATAAAAAAAGGAAACAAAAATCTTGATCAGATTTCCCCTTCCATGAGAAAATCTAGTTTTAACTACAAATACGAAACTCTTGAGAAGGCCACAGATTACTTCAACTCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGTTCAGTTTTCAAAGGTGTTCTCCCGAATGGGAAAGTTGTTGCTGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTGAATTTGATTAGTGGAATTGAACACAAGAATCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTTCTCGTGTATGAGTACTTACCCAAAAAGAGTTTAGATCAATTTCTCTTTGAAAGGAAAAAAAATGAGATTCTAAACTGGAAGCAGCGGTTTAATATCATTCTTGGTACAGCAGAAGGGCTTTCATATCTTCATGAAGGTTATAAAATAAGAATCATTCATAGAGACATCAAAAGCAGCAACGTTCTTCTGGATGAGAATCTCATTCCTAAGATCGCAGATTTCGGCCTTGCGCGGTGTTTTGGTGCTGATAAGTCACATTTAAGTACTGGAATTGCAGGAACACTAGGTTACATGGCTCCTGAGTACCTAACTAGAGGACAACTAACCGATAAAGCTGATGTCTATAGTTTTGGAGTACTTCTTCTGGAGATTGTAGGTGGAAGGATGAATAATATCTTCAGAGAGGATTCTGGCTCTCTTCTACAAACTGTTTGGAAACTTTACCAATCAAACACATTGATTGAGGCTGTTGATTCTTGCTTGGGAGATGATTTTCCTGCAACTGAAGCATCAAGGGTGATTCAAATTGGGTTGCTTTGTACACAAGCTTCTGCTTCCATGAGGCCAACCATGACCCAAGTTGTCCACATGTTGAGTAATTCAAATATTGATGTCCCTGTACCAAATCAACCTCCATTTCTGAACACTGGAAATCTAGACTCAGACAGCTCCATAAAATCTTACAGCACAAACAGCTTTGTGTCCAATGCCTTAAAGAAGATTGGAGTGTCCCACAGTTACTCTGAGTCAGAATCCTCTGGTTCACACAACTCTTATGAGCCATCAAGAAGTGAAGAAGCGATAATTCAAGCTTGA 1989 0.451 MAPWLLLYTIVFFFSWCSSPSLCDPRISEAGLYCGTTRAPLKANFIPSFIKEMENLSQLVTDHNWGTHSVNISGSIPIYGFAQCFHDLSHTDCLLCYAASRTRLPRCLPSLSARIYLDGCFLRYDNYSFYSERTDPARDAVNCSSRRGAAGGGVERLRLERSVGKVLDGVAVKAVAKGGGFAVGGGEGVYALAQCWKTVSNEGCRDCLRKAVKEVRGCLPNREGRALNAGCYLRYSTEKFYNEKGGESDSQHGSLKRGAIIAAVLAAAAVILLTFSVSYAAFTKLSKIKKGNKNLDQISPSMRKSSFNYKYETLEKATDYFNSSRKIGQGGAGSVFKGVLPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFLFERKKNEILNWKQRFNIILGTAEGLSYLHEGYKIRIIHRDIKSSNVLLDENLIPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLTRGQLTDKADVYSFGVLLLEIVGGRMNNIFREDSGSLLQTVWKLYQSNTLIEAVDSCLGDDFPATEASRVIQIGLLCTQASASMRPTMTQVVHMLSNSNIDVPVPNQPPFLNTGNLDSDSSIKSYSTNSFVSNALKKIGVSHSYSESESSGSHNSYEPSRSEEAIIQA* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1898 662 Gene3D Phosphorylase Kinase; domain 1 281 396 - -
Lja1g1898 662 ProSiteProfiles Gnk2-homologous domain profile. 27 129 IPR002902 -
Lja1g1898 662 SUPERFAMILY Protein kinase-like (PK-like) 304 618 IPR011009 -
Lja1g1898 662 Pfam Salt stress response/antifungal 74 127 IPR002902 -
Lja1g1898 662 Pfam Salt stress response/antifungal 181 237 IPR002902 -
Lja1g1898 662 MobiDBLite consensus disorder prediction 636 656 - -
Lja1g1898 662 Pfam Protein tyrosine and serine/threonine kinase 324 589 IPR001245 GO:0004672|GO:0006468
Lja1g1898 662 ProSiteProfiles Gnk2-homologous domain profile. 141 240 IPR002902 -
Lja1g1898 662 SMART serkin_6 321 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1898 662 Gene3D Transferase(Phosphotransferase) domain 1 397 597 - -
Lja1g1898 662 Gene3D - 155 240 IPR038408 -
Lja1g1898 662 Gene3D - 31 129 IPR038408 -
Lja1g1898 662 CDD STKc_IRAK 327 589 - -
Lja1g1898 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Lja1g1898 662 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 17 652 - -
Lja1g1898 662 MobiDBLite consensus disorder prediction 636 662 - -
Lja1g1898 662 ProSiteProfiles Protein kinase domain profile. 321 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1898 662 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 17 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1898 Lja-Chr1 21721181 21724910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1898 4 486 Receptor kinase-like Gene Family AT5G40380 55.372 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g1898 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1898 - - gmx:100790404 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1898 1 21721181 21724910 Lja1g1898 1 21721181 21724910 ECH