Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1891 ATGGCTTCTTCTAGCTACTCAAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCGGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCTCACAAGTTTTCCAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAGCTTCTCAATGAAGTCCAACCCCATCAAAGAGAGGATGCAGTGAACTCTTTAGCTTATGAAGCCGAGGCACGGATTAAAGATCCAGTTTATGGCTGTGTTGGAGCCATTTCAGTGCTCCAAAGGCAAGTGCTTAGGCTCCAAAAGGAACTTGATGCAACAAATGCAGATTTGATTCGCTTTACATGCAGTGAAATGGAAACTACTCAAGATGGAAGAAGGATTGGTGAAGGGGGAGGTTCTTCCCTTGGTCAATCTCCAGGGTTTTATTATCCTTATGCTTGGAACAATGATCCACTTGGGGATGGTTTTCAAAGAGGAGGTGACAATAATATGTGA 495 0.4404 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPHKFSNVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRFTCSEMETTQDGRRIGEGGGSSLGQSPGFYYPYAWNNDPLGDGFQRGGDNNM* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1891 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 151 - -
Lja1g1891 164 Coils Coil 89 109 - -
Lja1g1891 164 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Lja1g1891 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 151 - -
Lja1g1891 164 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1891 Lja-Chr1 21645013 21647448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1891 4 126 AS2 family AT3G27650 79.365 6.89e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g1891 LOB 2.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1891 - - var:108328620 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1891 1 21645013 21647448 Lja1g1891 1 21645013 21647448 ECH