Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1886 ATGTCCCCTACTCCAAATTTCCTTCACATGCCACACCCCAACCTCTGCATTTCCCGCATTCCCCAATCTCACGCCTTCACCCGCAACTTCAACAACCCCAATACCCGCTTTCTCTTCCAGGTTACGACCCCAAAGACCCGTTGCCGACTCGCCGCATCGGAGAGCAAGGAAGATGGTTCTGGGTTCCAGAAAGTTATCGGGAAACGGCTCGAGTTCCTGGCGTCCATTTTCCCCGGTGGGAGCTGGTGGACCTTACCGGAGCACCCGGAAGACGATGATGCTGATGCGACGGCGGTGTTCCCCGCTCTCCGGCGAATGTGGGAGTTGGTTGCCGATGAGCAGTGGGTTGCGTTTGTGGCGTTTGGGTCACTTGTTGTCGCTGCTCTTTCAGAAATCACCATGCCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTAAGACTGTTGCCTTCTCTAGGAATGCACTCTTTTTGGTTCTTCTGTGTTTCTCTTCAGGGATATGCAGTGGTCTGCGAAGTGGCTGCTTTGGAATTTTGAATGTGACCTTGGTAAGGCGTCTGCGAGAAAATTTATATACAGCCATTCTTTTTCAGGACATATCCTATTTCGATAAAGAAAAAGTTGGTGCCTTGACAAGCAGACTTGCAGCAGATTGTCAACGACTATCTCACGTTATAGGAAATGATCTTCAGTTGATATTACGCAACACTTTGCAGGGAACAGGAGCAATAATTAATTTGCTGGCTTTATCTTGGCCTCTGGCATTATCTGCATTGGTGATTTGTTCTATGTTATCTACAATATTCCTGATTTATGGCCGGTACCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCCTGTGCCAATGACGTAGCTCAGGAAACACTTACTTTGATAAGAATTGTCAGAGTGTATGGAACAGCAAAACAAGAATTTGAAAGGTACAAGCAATGGCTACAGAGATTAGCATTAATAAGTGGTCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACTCCCTTTACCGTTCAACTCAGGTATTTGCGGTGCTGTTAGGAGGGATGTCTCTTCTCAATTGTGGTGTAACTGTTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAGAAAGTTTTCCAACTGATGAATCTTTTGCCCAGTGACCAATTCTTAGCCAAAGGAGTTAAGTTACAGAGGTTTGCAGGGCATGTTCAGTTTGTAAATGTATCATTTTATTATCCTGCAAGGATTATGATGCCTGTTCTAGAATGCTTAAACTTCTCTGTAGAAGCAAATCAAGTTGTTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTGGTCAACCTTTTACTGCGTCTCTATGAGCCTAGTAGTGGTCAGATATACATTGATGGATTCCCTCTTAAAGAGCTGGATATCAGATGGCTGAGGCAGAACATTGGATTTGTGGCACAGGAACCCCATCTATTTCACATGGACATCAAGTCAAACATAAAATATGGCTGCCCTGGGAACATAAAGCAAGAAGATATTGAACGGGCAGCAAAACAGGCGTGTGTCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGCACTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCCAGGGCCGTTCTTAGGGATCCAGTTATTATGATACTTGATGAAGCAACCAGTGCCCTAGATTCTGAGAGTGAGCATTATATCAAGGATGTGTTGTATTCGTTAAAAGATGAATCTAAATCAAGAACCATCTTTATCATAGCACATAGGCTTTCTACTATAAAAGCTGCTGACAAGATATTGGTTATGGATGATGGCCGCATCGTTGAGATGGGAAACCATGAGGAGCTTTTGCTCAATGATGGGCTCTATGCAAAGTTAAATAAAATTCAAGATGATAATTTGACTTGA 2034 0.4371 MSPTPNFLHMPHPNLCISRIPQSHAFTRNFNNPNTRFLFQVTTPKTRCRLAASESKEDGSGFQKVIGKRLEFLASIFPGGSWWTLPEHPEDDDADATAVFPALRRMWELVADEQWVAFVAFGSLVVAALSEITMPSILAASIFSAQSGKTVAFSRNALFLVLLCFSSGICSGLRSGCFGILNVTLVRRLRENLYTAILFQDISYFDKEKVGALTSRLAADCQRLSHVIGNDLQLILRNTLQGTGAIINLLALSWPLALSALVICSMLSTIFLIYGRYQRKAAKLTQDFTACANDVAQETLTLIRIVRVYGTAKQEFERYKQWLQRLALISGRESVAYGLWNLSFNSLYRSTQVFAVLLGGMSLLNCGVTVEQLTKYVLYCEWLIYATWRVTNSLSSLLQSIGASEKVFQLMNLLPSDQFLAKGVKLQRFAGHVQFVNVSFYYPARIMMPVLECLNFSVEANQVVAIVGLSGSGKSTLVNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNIGFVAQEPHLFHMDIKSNIKYGCPGNIKQEDIERAAKQACVHDFISSLPNGYETLVDDNALSGGQKQRIAIARAVLRDPVIMILDEATSALDSESEHYIKDVLYSLKDESKSRTIFIIAHRLSTIKAADKILVMDDGRIVEMGNHEELLLNDGLYAKLNKIQDDNLT* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1886 677 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 118 399 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g1886 677 Gene3D - 423 676 IPR027417 -
Lja1g1886 677 Gene3D ABC transporter type 1, transmembrane domain 98 417 IPR036640 GO:0005524|GO:0016021
Lja1g1886 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 433 671 IPR003439 GO:0005524
Lja1g1886 677 SMART AAA_5 460 648 IPR003593 -
Lja1g1886 677 Pfam ABC transporter 453 599 IPR003439 GO:0005524
Lja1g1886 677 SUPERFAMILY ABC transporter transmembrane region 104 415 IPR036640 GO:0005524|GO:0016021
Lja1g1886 677 PANTHER ABC TRANSPORTER B FAMILY 56 676 - -
Lja1g1886 677 CDD ABC_6TM_TAP 120 407 - -
Lja1g1886 677 ProSitePatterns ABC transporters family signature. 571 585 IPR017871 GO:0005524
Lja1g1886 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 672 IPR027417 -
Lja1g1886 677 Pfam ABC transporter transmembrane region 119 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g1886 677 PANTHER ATP-BINDING ABC TRANSPORTER 56 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1886 Lja-Chr1 21548314 21558314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1886 188 673 Calmodulin-binding Proteins AT2G36910 35.984 8.38e-74 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1886 - - aprc:113857420 1031.55