Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1880 ATGGAGTCACCTGTTGATGGAGGAATTGTGTCTTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTAGATCATGATCCTCCTTCAACATTGGGGGCTTCTCGGCCTCCCATAAGAGGATCTAGAAATCACGGGGCTTCTTCGAATCGCCAAAATTATGGAATGAAGACCATCAACCGTGAAAACAGCTATGAAGAATTACCAAATATGGAGAAATCTGATGACAAATCTGTTGAAAATTGTTTGCAGAAGAATATCTCTGCAATAGAAACAAAATTGTGCATCGATGATCCAGTCGACGATTCCAAGAATTGTGATTCTAGTGGCGTATTAGAATCTGACAGCTGCATATTACCTTCGTCAAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGCGGAGAAGTTACTAATTCCGGTGAATTTAACGAAAGCAGGAAGACTAGCATCTACAGAGAGAGTACTGGAAGTGATGTTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGCAATTTGTATAAACCCCACAAGGCAAATGATGTGAGATGGGAAGCAATCCAAGCCATCCGAGTTCGTGACGGGGCATTGGAAATGAGACATTTTAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGCGTGTATCTCGCTGAGTTAAGTGCCACAAAGACTTGTTTTGCCATGAAAGTGATGAACAAAACGGAACTGGCAAGTCGCAAGAAGCTCGTGAGGGCTCAGACAGAGAGAGAGATATTGCAGTCGCTAGATCATCCGTTTCTACCCTCGTTATACACACACTTTGAGACCGAGACATTCTCGTGCTTGGTCATGGAGTTTTGCCCTGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCAGAGCATGCAGCCAGGTTTTACGTGGCGGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTCGGGATCATCTACAGAGACCTGAAACCTGAGAATGTGTTGGTAAGAGAAGATGGTCACATAATGCTCTCAGACTTTGATCTCTCTCTAAGGTGTGCTGTGAGTCCAACTCTGGTGAAATCATCAAACACTACCTTGGACACAAAAGGCTCATCGGGATACTGCATTCAGCCTGCGTGCATCGAGCCAACCTGTGTGATCCAGCCAGACTGCATCCAGCCTTCATGTTTCACGCCGCGATTTCTCTCCGGCAAATCCAAGAAAGATAAAAAGAAGTCAAAACCGAAGACTGACATTCACAATCAGGTTACCCCTCTCCCTGAGCTTATGGCTGAGCCGACGAATGCTCGATCGATGTCCTTCGTGGGCACACACGAGTACTTGGCGCCTGAAATCGTCAAAGGGGAAGGACACGGCAGTGCTGTGGATTGGTGGACATTTGGGATATTCTTGTACGAGCTTCTATTTGGAAGAACACCGTTCAAAGGCTCGGCGAATCGAGCGACTCTGTTCAATGTAGTTGGCCAGCCTTTAAGGTTTCCAGAATCACCTAGTGTGAGTTTTGCTGCCAGGGACCTGATTAGGGGTCTGCTTGTGAAGGAGCCTCAGCATCGTCTTGCCTATAGACGTGGCGCCACAGAAATTAAACAACATCCCTTCTTTCATAATGTGAACTGGGCGCTGATCCGGTGTGCGAGCCCACCGGAGGTTCCAAGACAGGCGATGAAAGCAGTCGCGGCTGAGAGGGTGGCACCAGGAGTGAAGCCTGCTGGTAATTATTTAGATATTGATTTCTTTTGA 1755 0.4655 MESPVDGGIVSLSEVQNSVSGVDHDPPSTLGASRPPIRGSRNHGASSNRQNYGMKTINRENSYEELPNMEKSDDKSVENCLQKNISAIETKLCIDDPVDDSKNCDSSGVLESDSCILPSSSECVSVDKSVESGEVTNSGEFNESRKTSIYRESTGSDVSDESSTSSLSSNLYKPHKANDVRWEAIQAIRVRDGALEMRHFRLLKKLGCGDIGSVYLAELSATKTCFAMKVMNKTELASRKKLVRAQTEREILQSLDHPFLPSLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTTLDTKGSSGYCIQPACIEPTCVIQPDCIQPSCFTPRFLSGKSKKDKKKSKPKTDIHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIVKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCASPPEVPRQAMKAVAAERVAPGVKPAGNYLDIDFF* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1880 584 Gene3D Phosphorylase Kinase; domain 1 198 283 - -
Lja1g1880 584 SMART serkin_6 200 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1880 584 MobiDBLite consensus disorder prediction 40 58 - -
Lja1g1880 584 MobiDBLite consensus disorder prediction 10 24 - -
Lja1g1880 584 SUPERFAMILY Protein kinase-like (PK-like) 174 560 IPR011009 -
Lja1g1880 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Lja1g1880 584 MobiDBLite consensus disorder prediction 1 58 - -
Lja1g1880 584 Gene3D Transferase(Phosphotransferase) domain 1 284 352 - -
Lja1g1880 584 PANTHER FLIPPASE KINASE 1-RELATED 48 584 - -
Lja1g1880 584 MobiDBLite consensus disorder prediction 134 170 - -
Lja1g1880 584 CDD STKc_phototropin_like 198 559 - -
Lja1g1880 584 Pfam Protein kinase domain 436 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1880 584 Pfam Protein kinase domain 201 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1880 584 Gene3D Transferase(Phosphotransferase) domain 1 433 557 - -
Lja1g1880 584 ProSiteProfiles Protein kinase domain profile. 200 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1880 584 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 48 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1880 Lja-Chr1 21476417 21480717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1880 94 584 AGC Kinase Gene Family AT5G47750 69.565 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja1g1880 Pkinase 4.8e-38 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1880 1 21476417 21480717 Lja1g1880 1 21476417 21480717 ECH