Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1874 ATGGCTAGGAGTTGGCTTATTGACATAGGAGGATTTGCAAAGAAAGTAAAAAGCACTGCTTTATCTTCATCTGAACAGATCAAGGATTGCGGGGCATATCGCGAATGCCCGAACTGTAGTTATCATATAGATAATAGTGATGTTTCTATTGAGTGGCCTGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGCCGAACTCTTAGAACATTTAGCAGCAAAATGTGGTATTGGGAATGCAAAGCCACACATGTTTATCCAGGAGTTCATCCCAACACTGGAAGGAGATGAAGGTATTTGCTATACACATCCAGAAAATCTTCCAGGTGCTAATAAAGATGGGAGCTATGTCCATTTCTTTAACAGAACAATTAATGCCTATACTACTGGTCAACGGAAGCGTCGAAGGATTCATTATGATGGTCTGACTGAAGACCATGTACGCTGGCATAAGACTGGTAAGACCAAAGCTGTTGTCGAAAATGGAGTACATAAGGGCTATAAGAAAATCATGGTTCTTTATATAAGATCTAATAAAGGGTCCAAGCCCTCTAAATCCAACTGGATAATGCATCAGTACCATCTAGGACCTGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAGCAAAAGCAGACTGACAAAAATGAGGAGAATCCAATGGCTGAAGATTCTGACATTATAACATCACGAACAAGTCCAAGGACTCCAAAACCAAATCCCCCCAATCCACCTCGCACAGGAAAATGTGTTGACTGTGATGATAATATTGATGAAGCTGCACTGTCATTTGCCCAGGATGTCAAATATATCCCTGGAGGATCGCACGCCCCACTATTTGACATTCAGGATCTGGACAATAGAGGCAATCCTGCATGGTTGGCTGGTGAATCACAGGCTCTGGAAGTTGCTGAGTTTGATGGCTTGGATGACATATTGTTGTGCAATGAGATTTTGGATTCTTCTGCTCTATTAAATGATGATTTTGGATTGGACTCCACCACTCTTAATGGCTTTTCTTCCTATGATAACATAATGGCTGGAAATGATAATGTGACTCGTGGAACTTCTGTCCTGGATACACTGGAATTGGATACTCCTCCAGATTTTGATCTTTCGAATTTGAACTTTGGTTCTCAAGATAGTATCCTTGGGTGGATGGACAGGTTATGA 1194 0.4087 MARSWLIDIGGFAKKVKSTALSSSEQIKDCGAYRECPNCSYHIDNSDVSIEWPGFPVGVKFDPSDAELLEHLAAKCGIGNAKPHMFIQEFIPTLEGDEGICYTHPENLPGANKDGSYVHFFNRTINAYTTGQRKRRRIHYDGLTEDHVRWHKTGKTKAVVENGVHKGYKKIMVLYIRSNKGSKPSKSNWIMHQYHLGPEEDEKDGEYVVSKIFYQQQKQTDKNEENPMAEDSDIITSRTSPRTPKPNPPNPPRTGKCVDCDDNIDEAALSFAQDVKYIPGGSHAPLFDIQDLDNRGNPAWLAGESQALEVAEFDGLDDILLCNEILDSSALLNDDFGLDSTTLNGFSSYDNIMAGNDNVTRGTSVLDTLELDTPPDFDLSNLNFGSQDSILGWMDRL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1874 397 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
Lja1g1874 397 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Lja1g1874 397 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 395 IPR044799 GO:0003700
Lja1g1874 397 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 395 - -
Lja1g1874 397 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Lja1g1874 397 MobiDBLite consensus disorder prediction 217 257 - -
Lja1g1874 397 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1874 Lja-Chr1 21400702 21405132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1874 33 217 NAC Transcription Factor Family AT4G28500 54.011 2.15e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g1874 NAM 6.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1874 - - gmx:100794879 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1874 1 21400702 21405132 Lja1g1874 1 21400702 21405132 ECH