Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1873 ATGGGATCTGGCAATGAGGTTCACTCAGTTGGAGAGTTCAATTTGGATGCTAGGTGGCTTATAGATTCCAAACAACTTTTTGTTGGGCCTAAAATTGGGGAAGGTGCCCATGCCAAGGTGTATGAAGGAAAATATAAAAATCAAAACGTTGCTGTTAAGATTATTAATAAGGGAGAAACCCCAGAAGAGATTTCTAGGAGAGAGGCTCGGTTTGCCAGAGAGATTGCAATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTGTTAGGAGGAACTTTGCGCAAGTATCTATGGAGTATCCGGCCGAAGTGCTTGGACATGCATGTGGCAGTTGGATTTGCTCTTGATATTGCCCGGGCAATGGAATGCTTACACTCCCATGGGATCATTCATCGTGACCTTAAACCTGATAATTTGATCTTAACAGCAGATCATAAAACTGTTAAACTTGCGGATTTTGGTCTTGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACGGGGACATATCGTTGGATGGCGCCTGAACTTTACAGCACTGTCACTCTAAGACATGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCGTATAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTCCAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCTAGTTCTGAAGACCTCCCTGAGGATTTAGCTCTGATTGTGACTTCATGTTGGAAGGAGGATCCAAATGATCGCCCCAATTTTAGTCAAATCATACAGATGCTTCTTCAATATCTCACTACTATTTCACCATCCAAGCCAGTTGTTCCGATGCGAATGGCTATGTCTGAGAATGTTGTGATGTCACCAGAAACTCCAGGCACAAGTGCTTTAATGGCCAGAAGAGATTATGCCGGGGAATCTCCAAAAGGTTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1035 0.4271 MGSGNEVHSVGEFNLDARWLIDSKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREARFAREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWSIRPKCLDMHVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSSEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLQYLTTISPSKPVVPMRMAMSENVVMSPETPGTSALMARRDYAGESPKGFFFCFNQCY* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1873 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Lja1g1873 344 PANTHER SERINE-THREONINE PROTEIN KINASE 1 327 - -
Lja1g1873 344 CDD STKc_MAP3K-like 32 286 - -
Lja1g1873 344 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Lja1g1873 344 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1873 344 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Lja1g1873 344 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Lja1g1873 344 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Lja1g1873 344 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Lja1g1873 344 SUPERFAMILY Protein kinase-like (PK-like) 18 313 IPR011009 -
Lja1g1873 344 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Lja1g1873 344 Gene3D Transferase(Phosphotransferase) domain 1 107 310 - -
Lja1g1873 344 PANTHER PROTEIN KINASE ATN1 1 327 - -
Lja1g1873 344 PIRSF TyrPK_CSF1-R 12 125 - -
Lja1g1873 344 PIRSF TyrPK_CSF1-R 116 327 - -
Lja1g1873 344 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Lja1g1873 344 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1873 Lja-Chr1 21378468 21383421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1873 1 327 MAP Kinase Kinase Kinase AT3G27560 80.243 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja1g1873 PK_Tyr_Ser-Thr 8.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1873 - - gmx:100808329 634.024