Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1861 ATGGCTGGAAAATTTCCTCACCAGCCTCAGCTGAAGAAGCCAACTCACTTTTTCAAGATCATAAGTAGTCACAGCCTTCATGAAGGAAAGCTAATGATCCCAAGAGCGTTTGTGGAGAAATATGAAGAAGGCTTACCAAAAACTATGTTTCTTAAGCCTCCAAATGGTAAAGATTGGAAATTAAATTTGGTGAAACTTGATGGTAACATGTGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGCATCATTCTCTAGCTCATGGACATCTTCTGGTTTTCAAATACCAGAGAACTTCCCATTTTCAAGTACAAATCTTTGACATGAGTGCCTTAGAGATAAACTACAATTTCAAAAGAGTAGAAGGTAAAAGGGCCTCTAATAGTGAAGGAAATAAACCTCCAAATGATGAAAGTTCAGAAGATTACAGAGCAGGTCAAAAGAGAAAAGCTAACTTGGCATTTGATTTTTTTCAACCATGTAAATTAGAAACTGGGAGAGATGATAAAGTTCGAAATGACTTGAAATTTCAAAAGGTGGCTTTGGATCACACGAACAAAAAGTGCAAAGGAAAACAAATTCTTACTGCTAAGCAAGCTACAGCTCTCGACAGAGCAAATTCTTTCAAAACTTGTAAACCATTCTTCATGGCTTTCATGCACCCGTCATATTTCTATTGTAATCTGAGTATACCAGCCAAGTTTGGAAAGAAACACTTAGATTTGGGCCAGAACGTGGGTGATATCCAACTTAGGGTGTTAAATGGGAGATTTTGGCCTGCAAGGTACATAATCAGGGAAAACGGTGAAAGAAAAAGATTTGATCTCTCATATTCAGGATGGAAGGCATTTTCTAAGGACAATAAGTTGAAAGTAGGTGATGTTTGTGTCTTTGAGCTCATTCATGGGACTAAACTTACCTTTCTGGTTCACATCTTTCGAGAGTCAGAAAATTCAAATTGTCCAACATCTCAAGAATACTCAAATAAAGCATCTATTGTATTCAAGGACAGGGAAAGGAAATGA 1023 0.3724 MAGKFPHQPQLKKPTHFFKIISSHSLHEGKLMIPRAFVEKYEEGLPKTMFLKPPNGKDWKLNLVKLDGNMWFQKGWKEFAEHHSLAHGHLLVFKYQRTSHFQVQIFDMSALEINYNFKRVEGKRASNSEGNKPPNDESSEDYRAGQKRKANLAFDFFQPCKLETGRDDKVRNDLKFQKVALDHTNKKCKGKQILTAKQATALDRANSFKTCKPFFMAFMHPSYFYCNLSIPAKFGKKHLDLGQNVGDIQLRVLNGRFWPARYIIRENGERKRFDLSYSGWKAFSKDNKLKVGDVCVFELIHGTKLTFLVHIFRESENSNCPTSQEYSNKASIVFKDRERK* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1861 340 CDD B3_DNA 16 107 IPR003340 GO:0003677
Lja1g1861 340 Gene3D - 193 317 IPR015300 -
Lja1g1861 340 SUPERFAMILY DNA-binding pseudobarrel domain 14 116 IPR015300 -
Lja1g1861 340 ProSiteProfiles B3 DNA-binding domain profile. 228 315 IPR003340 GO:0003677
Lja1g1861 340 PANTHER B3 DOMAIN-CONTAINING 12 314 - -
Lja1g1861 340 SMART B3_2 17 109 IPR003340 GO:0003677
Lja1g1861 340 SMART B3_2 214 315 IPR003340 GO:0003677
Lja1g1861 340 MobiDBLite consensus disorder prediction 123 144 - -
Lja1g1861 340 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Lja1g1861 340 CDD B3_DNA 213 313 IPR003340 GO:0003677
Lja1g1861 340 SUPERFAMILY DNA-binding pseudobarrel domain 208 315 IPR015300 -
Lja1g1861 340 Pfam B3 DNA binding domain 214 314 IPR003340 GO:0003677
Lja1g1861 340 Pfam B3 DNA binding domain 17 107 IPR003340 GO:0003677
Lja1g1861 340 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 314 - -
Lja1g1861 340 Gene3D - 10 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1861 Lja-Chr1 21213653 21216330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1861 14 313 B3 DNA Binding Superfamily AT3G18990 29.429 5.43e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g1861 B3 2.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1861 - - lja:Lj1g3v3690290.1 690.649