Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1848 ATGTGCAACAAGAATAGTCCAACTCAAACTTCAGAAGCTACACAAACAACAAACTCAATTATGAAGAAGAAAACCCAAAAACAACACATCAAAAAAGAGTTATTATCTTCTTCTTCATCTTCTTCATCTTCTTCTCTGAAACCGCACCGACGCAGAAACAGAACCAAAACCCGAAAGCCCAAGTACTTAAGCCTCCGTCTCCAACTCTCTCAATCCCAACAACCCGAACCCGAATCCGAAAGCCTGACCCACCAACAGAAAACCCACAATCTGAACAACAACCTCTTCACCGACGACAGGGACATTATGCACGAGGAGAACAACGTGGCGCTGCTGTTCACCTCCGACGGCGGCGCCACACTCACCGGGCTCCTCGAGGACGAGTCGACAACGACGGCGGAGGGATCGATGTCGCCGTCGGTTTCGGCGATGACGTGTCCGCCCGCGATGGAGGGGTTGGTGAGGAAGGCGATGAGGAAGGGGCGGGGGAGCGGCGACGGGGAGGAGGAGAGGTGGGTGTGTTACTCGGAGGTGGTGGAGGAGATCAAGAAGGAGATGATGACGACGACGACGGAGGAGGTGACGAGTTACTGCGGCGGTGGTGATACGACGGCGACGGCGGCGTTTGGGTCGTTGTCGTTGAAGCTGGATCACGAGGGGATATTGAATGCTTGGTCTGATAAAGGGCCTCTTTACATTGGTGATGAGGCCCCACAGGTTGTCCCTGATTTATTCAATGCTGGCGGTTTTCTCCATACGGCATTTCCTCCCAATGTTGCATCATGGGACAGTTGGGGGGTTGATGTTGTTGGGAACACATGGACAGTTCCTGAAGATAACAAGACGAAAGTGAAGCAAGAAATGGATTGGAAGGTGGGGCAGAGAGAGGCTAGTGTGCAGAGATACAAGGAGAAGAGGCAAAACAGGCTCTTCGCTAAGAAGATCCGTTATGAAGTTCGCAAGCTCAATGCTGAGAAACGGCCCCGGATGAAGGGACGATTTGTGAAGAGGGAATGA 1017 0.5211 MCNKNSPTQTSEATQTTNSIMKKKTQKQHIKKELLSSSSSSSSSSLKPHRRRNRTKTRKPKYLSLRLQLSQSQQPEPESESLTHQQKTHNLNNNLFTDDRDIMHEENNVALLFTSDGGATLTGLLEDESTTTAEGSMSPSVSAMTCPPAMEGLVRKAMRKGRGSGDGEEERWVCYSEVVEEIKKEMMTTTTEEVTSYCGGGDTTATAAFGSLSLKLDHEGILNAWSDKGPLYIGDEAPQVVPDLFNAGGFLHTAFPPNVASWDSWGVDVVGNTWTVPEDNKTKVKQEMDWKVGQREASVQRYKEKRQNRLFAKKIRYEVRKLNAEKRPRMKGRFVKRE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1848 338 PANTHER CCT MOTIF FAMILY PROTEIN 43 338 - -
Lja1g1848 338 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 43 338 - -
Lja1g1848 338 MobiDBLite consensus disorder prediction 1 89 - -
Lja1g1848 338 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Lja1g1848 338 MobiDBLite consensus disorder prediction 47 61 - -
Lja1g1848 338 Pfam CCT motif 295 337 IPR010402 GO:0005515
Lja1g1848 338 MobiDBLite consensus disorder prediction 32 46 - -
Lja1g1848 338 MobiDBLite consensus disorder prediction 64 89 - -
Lja1g1848 338 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1848 Lja-Chr1 20864080 20868648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1848 212 337 C2C2-CO-like Transcription Factor Family AT1G25440 39.683 7.45e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g1848 CCT 7.1e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1848 - - lja:Lj1g3v3729230.1 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1848 1 20864080 20868648 Lja1g1848 1 20864080 20868648 ECH