Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1829 ATGGGAAGAAAGCCTTGTTGTGATAAGATTGGTTTGAAGAGAGGTCCATGGACTATGGAGGAAGATCACAAGCTTGTGAATTTTATACTCAACAATGGCATCCATTGCTGGAGAATGGTTCCCAAACTTGCAGGTCTTTTAAGGTGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGACTTTACAGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTAAAGCTTCTTGGCGTGGACCCTCTGACCCACAAGCCAATCGAGCTGAAGAAACAGACTGATGAGGACAAAAACAAGACCAACTTAATCATACAGCCAGATATTTCCAAAGGGTCTGAACAAAATGTGGAGACTAAATTATTATTGGATGGTTATGGCAGCAAAGAAATGACAAAAACAGATGAGAAAAGAGAAGAAAACAAGGTGACATGGGATGATACCTCAGAACTTATGAACAATTTTGAAATGCTATGCTCACAATTGGACTTGGGATCATGGATAAGCCATGAAACCAACACTAGTGCTAATTCTTTCAGCAGTTCCTCTGCTTCTTTGGATGAAACTAGCCACCTTTCTATGAGTGAATCCACTTGCCTTCAGGAAAATTCCTTGCAACAATGGGTTGATAACATAGATTCCAATCTCTCATGGGATGGCTTCAATCCTTTTGACCAAGATTTTTTCTTCCTGGGAAATAGGGAATAA 831 0.4031 MGRKPCCDKIGLKRGPWTMEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGDFTEMEEDQIIQLHSCLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLKLLGVDPLTHKPIELKKQTDEDKNKTNLIIQPDISKGSEQNVETKLLLDGYGSKEMTKTDEKREENKVTWDDTSELMNNFEMLCSQLDLGSWISHETNTSANSFSSSSASLDETSHLSMSESTCLQENSLQQWVDNIDSNLSWDGFNPFDQDFFFLGNRE* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1829 276 CDD SANT 16 61 IPR001005 -
Lja1g1829 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g1829 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g1829 276 Gene3D - 68 161 - -
Lja1g1829 276 CDD SANT 70 110 IPR001005 -
Lja1g1829 276 PANTHER MYB DOMAIN PROTEIN 40 2 252 - -
Lja1g1829 276 SMART sant 66 114 IPR001005 -
Lja1g1829 276 SMART sant 13 63 IPR001005 -
Lja1g1829 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g1829 276 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lja1g1829 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g1829 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g1829 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 252 - -
Lja1g1829 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g1829 276 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1829 Lja-Chr1 20701199 20702656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1829 1 161 MYB Transcription Factor Family AT5G16600 63.975 1.17e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g1829 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1829 K09422 - gmx:100783231 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1829 1 20701199 20702656 Lja1g1829 1 20701199 20702656 ECH