Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1821 ATGGTGGTAACCGAAGAACAAAAATGCACCCCCACAAGCCAAAAGCAGTCAAGTAGCCAAAACATGGTCGCTCTTCTCAGCCCAAGGTTCAAATCTGCGGCTGCTAAAGCCGGTTGGGATGAAGAGGCTCTGTTACTGGCCAGCCTCATCGTCGAAGACACGCCGGAAAGAGATTCCAAGCACAAGAGGCGTTCTATTCTGAACATCAAAACCCCACCACTATCTAATTCAAAAAAGAAGCGCAGAGTTCAGAGGAGTCCACAACTACAAGCAGTCCCTGTAGTTGTTCTTGATCTTGATGCTGAAGATTCTCCCACAAAGGGTAGTGGGAAAAAGAAGAAAGAAAAGAAAAACTCTGTGGCTGAAGGAAGTAAAGGAGGAGCAGATGAATCGAATCAGAATCAGAAGAAGGATTCTTCTGGTGTCTCCTCTTCAAGTTCCACCAGTTCTGCTCTTCCCTGCATTGATAAACTTAAGGAGGAGCTTTCCTGTGCGATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGCGATCTGCTGCGGACAAGTGTGGCAAGAAATGCCCCAAATGCAGGCAATTGATAAGTAATGGACGATCCTGCACCATTAACACAGTTCTATGGAACACAATACAGCTCCTGTTTCCTCAGGAAGTTGAAGCAAGGAAAGCAGCTGCAGCTAGTGCCTTGAATACTAGTGAAAAGGCTCAATGTCTGAGTCCAGAAACAGCATTTTACAGTAACCTAAGGAATCGAAGCACGCAACCTAGTCATGGGGCACCAAGCAGAGGAGCTGGACAAACCCACCAAGGATCCAGGGTTGTTCAGACTAGTTCAAGGAATCAAACCTCAACAACAGCAGCAGCTATAGCAGCAGCATCTGCAAGAGTGAGGACAAGAAGAGTGGTTTCTAACCAAGATGAAGATGCTGCTTTGGCTCTAAGGTTGCAAAGAGAAGAGTTTCTTCAAGTTTATAGGGGGGGAAGCCAGGAGCAGTCCAGCACTTCATTATCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGCATTAGAGATCGAAGAGTATAA 1113 0.4582 MVVTEEQKCTPTSQKQSSSQNMVALLSPRFKSAAAKAGWDEEALLLASLIVEDTPERDSKHKRRSILNIKTPPLSNSKKKRRVQRSPQLQAVPVVVLDLDAEDSPTKGSGKKKKEKKNSVAEGSKGGADESNQNQKKDSSGVSSSSSTSSALPCIDKLKEELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTINTVLWNTIQLLFPQEVEARKAAAASALNTSEKAQCLSPETAFYSNLRNRSTQPSHGAPSRGAGQTHQGSRVVQTSSRNQTSTTAAAIAAASARVRTRRVVSNQDEDAALALRLQREEFLQVYRGGSQEQSSTSLSRANLRAMASRAMNLRIRDRRV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1821 370 MobiDBLite consensus disorder prediction 51 150 - -
Lja1g1821 370 Pfam Zinc finger, C3HC4 type (RING finger) 164 202 IPR018957 GO:0046872
Lja1g1821 370 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Lja1g1821 370 MobiDBLite consensus disorder prediction 104 123 - -
Lja1g1821 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 233 IPR013083 -
Lja1g1821 370 MobiDBLite consensus disorder prediction 261 298 - -
Lja1g1821 370 PANTHER - 21 245 - -
Lja1g1821 370 PANTHER - 284 368 - -
Lja1g1821 370 MobiDBLite consensus disorder prediction 125 150 - -
Lja1g1821 370 ProSiteProfiles Zinc finger RING-type profile. 164 203 IPR001841 -
Lja1g1821 370 PANTHER UNCHARACTERIZED 21 245 - -
Lja1g1821 370 PANTHER UNCHARACTERIZED 284 368 - -
Lja1g1821 370 SUPERFAMILY RING/U-box 156 227 - -
Lja1g1821 370 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g1821 370 SMART ring_2 164 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1821 Lja-Chr1 20622564 20624279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1821 156 224 C2H2 Transcription Factor Family AT5G39550 40.278 1.32e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1821 - - lja:Lj1g3v3754810.1 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1821 1 20622564 20624279 Lja1g1821 1 20622564 20624279 ECH