Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1805 ATGGCGAGAAAATGCAGCACCAACACCATGGATCCAAACAGCGGTTTCAACTCCGCTTCCAGAACCTTCCACAGCCTCAGACCCCCACTTAACCTCCCTCCACCCTCCGCCACCCTCTCCGCCGCAGCCTACACTCTCTCCCTCCGCCGCAACTCGCCCTGGTCAGACTCAGAAATCGCCCTGATAGACTCAGCCACGAGTCACCAACTCACATACTCTGATTTCATCCAACGTTCACAAAACCTCGCTTCCAACCTCGCTAACCTCCACGGACTCACCAAAGGTCACACCGCGTTCATTCTCTCACCGAATCTCACGCAAGTCCCGATCCTCTACTTCGCGCTACTCTCAATCGGCGTGGTCCTCTCTCCGGCGAATCCAGCCTCCACGCGCTCCGAGATTTCGCATTTGCTCGCGCTCTCGAAACCGGTCATCGCATTTGCGACGTCGTTTTCTGCTCACAAGCTCCCAAACCTCCCATTGAGAACGATTCTCCTTGACTCGCCCGAGTTCGACTCGCTCATGACGGCGGTCGCTTCCTTGGCCGCGCCGCCGGCCGAGGAAGTCAGACAGTCCGACTTGGCTGTGGTTTTGTACTCGTCCGGGACCACCGGGAAGGCGAAGGGAGTGATGCTCACGCACCGGAACCTGACGGCGGCGATGGCGGCGTACGACGCAGTTCGCGTGCAGACGGAGAGGCCCGCGGTGTTTCTGCACACAGTGCCGTATTTCCACGTGTACGGGTTCACGAGTGTGATGAGGTCGGTGATGATGGTGGATACGGTGGTGGTGATGGGGAGGTTTTCTTTGGGGAAGATGCTGGCGGCGGTGGAGAGGTTTGGGGTGACGAACCTTTCGACGGCGCCGCCGTTGGTGGTTGCGATGAGCAAGGAGGGGGTGACGGAGGGGTATGACTTGACGTCGTTGAAAGGCATCTCTTGTGGCGGCGCTCCGCTTGGAAAGGAGACCGTCGCGGCTTTCAAATCGAAGTTCCCCGGAACACTGCTGGTTCAGGGATATGGATTAACTGAATCAACGGCTGGAATCATCAGAACAACAGGTCCGGTGGAGGCCAGCCAGCCAGGAACAACAGGCAGGCTACTAGCCGGAATTGAAGCGAAAATAGTGAACACCGAGACAGGAGAGGCCATGTCTCCTGGTGAACAAGGGGAACTCTGGCTTAGAGGACCACTAATTATGAAAGGTTATGTTGGTGATCCAGAGGCAAATTCTGCTACTTTGGTGGACGGGTGGCTGAGGACTGGGGATCTCTGCTATTTTGACAATGAAGGTTTTATGTATGTTGTGGACAGGTTGAAGGAATTGATCAAATACAAAGGATACCAGGTTGCTCCTGCAGAGCTAGAACATTTGCTCCAGTCACACCCAGATATAAAGGATGTTGCAGTTATTCCATACCCTGATGAAGATGCTGGCCAAGTGCCTATGGCTTTTGTAGTGAGACAGCCACAAAGTTCCATTGGCGAAGCAGAAATAATAGAATTTGTAGCCAAACAGGTGGCACCATACAAGAAAATAAGACGTGTAGCATTTGTCGATTCCATACCAAAGAATGCAACTGGAAAGATTCTAAGAAAGGACTTAAGTAAAATTGTCCTCCAACAATCTTACTCTAGGTTGTAA 1644 0.5341 MARKCSTNTMDPNSGFNSASRTFHSLRPPLNLPPPSATLSAAAYTLSLRRNSPWSDSEIALIDSATSHQLTYSDFIQRSQNLASNLANLHGLTKGHTAFILSPNLTQVPILYFALLSIGVVLSPANPASTRSEISHLLALSKPVIAFATSFSAHKLPNLPLRTILLDSPEFDSLMTAVASLAAPPAEEVRQSDLAVVLYSSGTTGKAKGVMLTHRNLTAAMAAYDAVRVQTERPAVFLHTVPYFHVYGFTSVMRSVMMVDTVVVMGRFSLGKMLAAVERFGVTNLSTAPPLVVAMSKEGVTEGYDLTSLKGISCGGAPLGKETVAAFKSKFPGTLLVQGYGLTESTAGIIRTTGPVEASQPGTTGRLLAGIEAKIVNTETGEAMSPGEQGELWLRGPLIMKGYVGDPEANSATLVDGWLRTGDLCYFDNEGFMYVVDRLKELIKYKGYQVAPAELEHLLQSHPDIKDVAVIPYPDEDAGQVPMAFVVRQPQSSIGEAEIIEFVAKQVAPYKKIRRVAFVDSIPKNATGKILRKDLSKIVLQQSYSRL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1805 547 Pfam AMP-binding enzyme 58 445 IPR000873 -
Lja1g1805 547 Gene3D - 441 544 IPR045851 -
Lja1g1805 547 SUPERFAMILY Acetyl-CoA synthetase-like 55 541 - -
Lja1g1805 547 CDD 4CL 57 535 - -
Lja1g1805 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 541 - -
Lja1g1805 547 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Lja1g1805 547 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Lja1g1805 547 Gene3D - 35 440 IPR042099 -
Lja1g1805 547 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 11 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1805 Lja-Chr1 20454383 20458597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1805 1 547 Monolignol Biosynthesis Gene Families AT5G63380 49.911 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1805 - - lja:Lj1g3v3833570.1 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1805 1 20454383 20458597 Lja1g1805 1 20454383 20458597 ECH