Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1798 ATGTCTCCTCCATCACTTTGTGCTCCAGCACTCTGTGTCAATGGTTGTGGCTTCTATGCTTCAATCAATAACTTTTGTTCCAAATGTTTCAAAGATCATGTCAAAGAACACTCTGATCATAAATCAGAGAATGAAGGGGCTGGGAATGAAAACAAGAACTTGAAAGCTTATATTGCTGAATTATGTGATGGTGTTGCTGCAATTAGTGTCACTGACTCTACAAGCATGAAGAAGAAGAGAAATAGGTGCGAGATTTGCAACAAGAAAGTTGGACTAACAGGGTTTGAGTGCCGATGTGGGAATCTATTTTGTGGAACGCATAGGTACCCAGAAGAGCACTCTTGTAATGTGGATTTCAAGAAGATTGGTCGTCAAGTTTTGGCCAAACAAAATCCTAAATGTGTTGGTGACAAGCTAGAATACAGGGTCTAG 432 0.4028 MSPPSLCAPALCVNGCGFYASINNFCSKCFKDHVKEHSDHKSENEGAGNENKNLKAYIAELCDGVAAISVTDSTSMKKKRNRCEICNKKVGLTGFECRCGNLFCGTHRYPEEHSCNVDFKKIGRQVLAKQNPKCVGDKLEYRV* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1798 143 SMART AN1_Zf_4 83 120 IPR000058 GO:0008270
Lja1g1798 143 Gene3D - 65 137 IPR035896 -
Lja1g1798 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 11 44 - -
Lja1g1798 143 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 9 143 - -
Lja1g1798 143 SUPERFAMILY AN1-like Zinc finger 72 137 IPR035896 -
Lja1g1798 143 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 143 - -
Lja1g1798 143 SMART A20_3 9 31 IPR002653 GO:0003677|GO:0008270
Lja1g1798 143 Pfam AN1-like Zinc finger 83 118 IPR000058 GO:0008270
Lja1g1798 143 Gene3D - 3 53 - -
Lja1g1798 143 ProSiteProfiles Zinc finger AN1-type profile. 77 123 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1798 Lja-Chr1 20384878 20385309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1798 11 140 C2H2 Transcription Factor Family AT3G52800 36.306 1.72e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1798 - - lja:Lj1g3v3833900.1 310.457