Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1790 ATGCTCAAAGTTAGTTCAATGAGACATTTTTACCTCCATCTTGTGGTTCTTTCCTGGTTTTGGTTCATTCATGGTACCCATGAGCTACAATTTGCTCAGACCCAAGTCCTGTTACAGTTAAGGAAGTACCTTGAGTACCCTACCTCTTTGGAAGTTTGGGAAAATTACAATGGGGACCTTTGCAGCATTTCTCCATCTGCACACATGAGCATCAAGTGTGAGGGTGATTCAGTAACTGAGCTTAAAATCATGGGAGATAAGCATGTGAAGGTAGAAAAATTCAATGGATTTGCAGTTCCAAATCAGACACTATCCTTGAGCTTCTCTATTGATTCTTTTGTCACCACATTGACCAGGTTAACCAGCTTAAGGGTCCTCAGTTTGGTGTCCTTAGGGATTTGGGGGCCCCTCCCTGATAAAATTCATAGATTGTCTTTGCTTGAAGTCTTGGACATGAGCTCAAATTTCTTATTTGGTTCCATCCCTCCAAAACTAGCTACAATGGTAAAGCTTCAAACACTAACACTTGATGGCAATTACTTTGACAGCACCATGCCTAATTGGTTTGATTCATTGTCTAATCTCAGTGTCTTGAGTTTGAAGAGGAACCACTTGAAGGGTTCATTCCCCTCCTCACTGTGCAAAATTAAGAGTCTTACTGATATTTCCTTGTCCCACAATGAGCTATCTGGTGGGCTTCCTGATCTCACTACTCTCTCTGGCCTACATGTCCTGGATTTAAGACAAAATCATTTAGATTCTGAACTACCATTGATGCCTAAAGAAGTAGTAACTATTCTGCTAAGTGGAAATTCATTCTCAGGTGAGATACCTAATCAGTTTGGTGAATTGGGTCAGCTTCAACATCTAGATCTTTCATCAAATCATCTTACTAAGATGCCAACATCTTCCTTGTTCTCTTTGCCAAACATGAGCTATCTGAATTTAGAAAGCAATCTGCTAAGCGGGTCCCTTCCACACAAACTTAAATGTGGCAGCAAACTTGGCTTTGTGGATATCTCTAGTAACAAGTTCAATGGTATGCTTCCTTCTTGCTTGGCCAGTACAACTAATGGAAGAGTTGTCAGATATAGTGGAAATTGTTTATCTCTTCTCTCACAGCCTCAGAAGAGAGGGTCTTATTGTGAAGAATCCAGTTCAGGAAGGATGAAATTCTGGAGATGGATAATAATAGCTGCAGCAGCTGCTGTCATTATTATAGTTGTTCTTGTACTTTTAGCTTTAGGAATTTGCTTTTACAGAAAACATCATTCAAGGGAGATTTACAGGCATGAGATGATGTCAAAGGCTGTTCAAGATAACTCAACAACAGGAGTTTCCTCTGAATTTCTTGCTAGTGCTAGATTCATTTCTCAAACAGTGAAGCTAGGGACACAAGCTAATCCAACTTGTCGACAGTTTTTGATTGAAGAGTTGAAGGACATCACAAGAAACTTTGCATTGTCAACTTGTATTGGTGAAGGATCTATAGGAAAGCTGTACAAAGGTAAACTTGAGAATGGATCTTACGTGGTGATAAGATCTCTACCTCTGAAAAAGAAATTCTCAATACAAAATCTTAGAGCTCGGTTGGATTTACTCTCAAAGCTTCAGCATCCAAATTTGGTTAGCCTCTTGGGTCACTGTATTGATGGTGGTGGACAAGATGATACTAATAGTAGCCACAAACTTCATCTTGTATATGAGTACGTGCCAAATGGGAATTATCGTAGACATTTGTCAGAATTTTCTTCAGACAAGGCACTAAAATGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCCAAGGCTGTGCATTTTTTACATACTGGAGTTATACCAGGTTGTTTAAGAAACCAATTGAGGACAAACAATGTTTTACTTGATGAGCATCGCTTTCCCAAGTTAAGTGACTATGGTATGTCCATGATCGCCGACGAGATTGAAAATCTTGAGGCAAAGGGAGGGAATCCGAAATCATGCCAAATGGAAAAGTTAGAGGATGATGTTTATAATTTTGGATTCATATTGTTTGAATCACTTGCTGGACCAATAGCAAGCGACAAAGGAGAAGCATTTTTTGTTGATGAAAAGGCCTCCTTTGGCAGTCAAGATGGTAGAAGAAAAATTGTAGATCCAGTAGTGTTGACCAGTTGCTGTCAAGAGTCATTATCAATTGCAATATCCATCACAACCAAATGCATAACTCCAGAATCATCATCTCGTCCATCTTTTGAGGACGTTCTCTGGAATTTACAGTATGCAGCACAAGTTCAAGCCACAGCAGATGCAGATCAAAAATCTGATTCTCCACCCTAG 2319 0.3954 MLKVSSMRHFYLHLVVLSWFWFIHGTHELQFAQTQVLLQLRKYLEYPTSLEVWENYNGDLCSISPSAHMSIKCEGDSVTELKIMGDKHVKVEKFNGFAVPNQTLSLSFSIDSFVTTLTRLTSLRVLSLVSLGIWGPLPDKIHRLSLLEVLDMSSNFLFGSIPPKLATMVKLQTLTLDGNYFDSTMPNWFDSLSNLSVLSLKRNHLKGSFPSSLCKIKSLTDISLSHNELSGGLPDLTTLSGLHVLDLRQNHLDSELPLMPKEVVTILLSGNSFSGEIPNQFGELGQLQHLDLSSNHLTKMPTSSLFSLPNMSYLNLESNLLSGSLPHKLKCGSKLGFVDISSNKFNGMLPSCLASTTNGRVVRYSGNCLSLLSQPQKRGSYCEESSSGRMKFWRWIIIAAAAAVIIIVVLVLLALGICFYRKHHSREIYRHEMMSKAVQDNSTTGVSSEFLASARFISQTVKLGTQANPTCRQFLIEELKDITRNFALSTCIGEGSIGKLYKGKLENGSYVVIRSLPLKKKFSIQNLRARLDLLSKLQHPNLVSLLGHCIDGGGQDDTNSSHKLHLVYEYVPNGNYRRHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGVIPGCLRNQLRTNNVLLDEHRFPKLSDYGMSMIADEIENLEAKGGNPKSCQMEKLEDDVYNFGFILFESLAGPIASDKGEAFFVDEKASFGSQDGRRKIVDPVVLTSCCQESLSIAISITTKCITPESSSRPSFEDVLWNLQYAAQVQATADADQKSDSPP* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1790 772 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Lja1g1790 772 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Lja1g1790 772 SUPERFAMILY Protein kinase-like (PK-like) 468 752 IPR011009 -
Lja1g1790 772 Pfam Protein tyrosine and serine/threonine kinase 488 749 IPR001245 GO:0004672|GO:0006468
Lja1g1790 772 ProSiteProfiles Protein kinase domain profile. 486 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1790 772 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 5 769 - -
Lja1g1790 772 Gene3D Ribonuclease Inhibitor 264 384 IPR032675 -
Lja1g1790 772 SUPERFAMILY L domain-like 102 369 - -
Lja1g1790 772 PANTHER OS07G0166700 PROTEIN 5 769 IPR045272 GO:0004714|GO:0006468
Lja1g1790 772 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Lja1g1790 772 Gene3D Transferase(Phosphotransferase) domain 1 571 770 - -
Lja1g1790 772 Gene3D Ribonuclease Inhibitor 31 263 IPR032675 -
Lja1g1790 772 Gene3D Phosphorylase Kinase; domain 1 447 570 - -
Lja1g1790 772 SMART LRR_typ_2 284 307 IPR003591 -
Lja1g1790 772 SMART LRR_typ_2 308 332 IPR003591 -
Lja1g1790 772 SMART LRR_typ_2 192 216 IPR003591 -
Lja1g1790 772 SMART LRR_typ_2 239 262 IPR003591 -
Lja1g1790 772 SMART LRR_typ_2 168 191 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1790 Lja-Chr1 20267435 20272526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1790 12 771 Miscellaneous Gene Families AT5G14210 53.428 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Lja1g1790 PK_Tyr_Ser-Thr 1.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1790 - - gmx:100813412 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1790 1 20267435 20272526 Lja1g1790 1 20267435 20272526 ECH