Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1786 ATGATCATCATTCCCTTCCACATGGGAGGAGCTTTGGTATTCTTCCTTTGCTTCCTTGTCCCTTCATTGGGTAAAAACCTGCTAACCTGTGAGACAACATCACCATATGATGCCTCTGGCTACTACCATTGCAATGAAAAAGTGTCACACTCACTGAGCCATTGTGGAACATTTGCACTCTTCCTCACTAACTCTCACTACCCTTCTCTCTCCAACCTCACCTTTTACTTGGGACTCAATAGGTTTGTCATAGCAGAAGCAAATGGATTCTCTGCTGAAACTGAGTTCCTCCCTCAGAATCACCCTCTTCTCATACCAATTGATTGTAGATGCAAAGGTGAGTTTTTTCAGGCTGAGTTAACCAAAACAACCATCAAAGGCTTGACAACCTGCAAGGCTATTAGGGAAAATAACCCTGATGTTTCACCTTGGAATCTTGATGATAATCTCAGATTGATTATCCCATTGAGGTGTGCTTGCCCATTTTCATCTGAACCAAGAATTTTGCTTTCTTATATTGTAAGGGAAGGTGATACAATTTCCAATTTGGCCTCAAAGTTCAATATTACAAAAGAAGCTATAGTTTCTGCAAATAACATATCACTAGAAGGGCTTGGACCAAAAAAACTTGCACCCTTTACCTCTATTCTGATTCCACTGAATGGTAAACCAATTTTTGGTCCACTGGCTAAACCCATGGAACCCAATTCAAGTTTTCCAACAACCAGAATCCCAACACACAAGAAGTCAGCAATGTGGAAAACTGAATTGTACATTGCACTAGCTGGGGTTGCAATTGGAGTCTTCATTGCTTTTGCAGCAGCTTTCTTTGTGATCAGGTTGAAGCAAAAGAAGGTGAAAGAGAATTCAAGCAAAGAAAGAGACATGGAGCTGCAATATCTGAATCAAAGTGTGAGAACCACAACCACAAGTGACAAGAAGATTTCATTTGAGGGATCACAGGACACTCTTGATGGGAAAATGGTTGATACCAATAAGATGTTGCTGGAGACATACACTGTTGAAGATATGAGAAAAGCAACTGAGGATTTCAGTTCAAGCAATCAAATTGAAGGATCAGTGTTTCATGGCCGTTTAAAAGGGAAGGACATAGCAATCAAAAGAACAAAGACAGAGATGGTGTCAAAGATAGATCTTAGCCTCTTCCACTATTCTTCACTTCACCACCATCCTAACATCCTTGGGGTTCTGGGGACATGTTTGTTAGAGGGGCCAGAGTCATATCTGGTTCTTGAGTATGCTAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTAGCCATCAAGAACCAGTTCATTGCTTCCTGCTATTGTTTCCTGAATTGGAGCCAAAGGCTCAGGATTTGCCTAGACATAGCCAATGCCTTGAAATACATGCACCATGTTATGAACCCAAGCTATGTGCATAGAAATGTGAAGAGCAGGAACATTTTTATAGATGAAGAATTTGGTGCCAAGATAGGCAATTTTGGGTGTGTTGAGAATGATTATGACACTGAAGACCCTCATTTCTATTCTACTAACCCTGCCTCTTGGAGTTTGGGTTATTTGGCACCAGAATATGTGCACCAAGGTGTGATTTCTCCAAGCATTGATATTTTTGCTTATGGGGTGGTGTTGTTGGAGGTTTTAACTGGTCAAACACCTATAAGCAGGACAAATGATAAAGGGGAAGGAAGTGTTTGGCTTACTGAAAAAGTAAGGTCCACTTTGGTGTCAGAAAATGTGAATGAACTGAGGGAGTGGATAGACAGTGCATTAGGGGAGAACTACTCAATTGATGCAGCTATGACAGTGGCTAAAATTGCAAGAGCTTGTGTGGAGGAAGATTCATCTTTGAGGCCAAGTGCAAGAGAAATTGTTGAGAAGCTATCAATATTGGTGGAGGAATTACCAGAAAGGGAACAAAAAGTGTCAATAAGTGAAAGCTCTTGCAAACCTCTTGTGGACAATCTGTGA 1983 0.4095 MIIIPFHMGGALVFFLCFLVPSLGKNLLTCETTSPYDASGYYHCNEKVSHSLSHCGTFALFLTNSHYPSLSNLTFYLGLNRFVIAEANGFSAETEFLPQNHPLLIPIDCRCKGEFFQAELTKTTIKGLTTCKAIRENNPDVSPWNLDDNLRLIIPLRCACPFSSEPRILLSYIVREGDTISNLASKFNITKEAIVSANNISLEGLGPKKLAPFTSILIPLNGKPIFGPLAKPMEPNSSFPTTRIPTHKKSAMWKTELYIALAGVAIGVFIAFAAAFFVIRLKQKKVKENSSKERDMELQYLNQSVRTTTTSDKKISFEGSQDTLDGKMVDTNKMLLETYTVEDMRKATEDFSSSNQIEGSVFHGRLKGKDIAIKRTKTEMVSKIDLSLFHYSSLHHHPNILGVLGTCLLEGPESYLVLEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWSQRLRICLDIANALKYMHHVMNPSYVHRNVKSRNIFIDEEFGAKIGNFGCVENDYDTEDPHFYSTNPASWSLGYLAPEYVHQGVISPSIDIFAYGVVLLEVLTGQTPISRTNDKGEGSVWLTEKVRSTLVSENVNELREWIDSALGENYSIDAAMTVAKIARACVEEDSSLRPSAREIVEKLSILVEELPEREQKVSISESSCKPLVDNL* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1786 660 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 658 - -
Lja1g1786 660 SUPERFAMILY Protein kinase-like (PK-like) 332 632 IPR011009 -
Lja1g1786 660 Pfam LysM domain 172 219 IPR018392 -
Lja1g1786 660 Gene3D Phosphorylase Kinase; domain 1 323 420 - -
Lja1g1786 660 Gene3D LysM domain 170 219 IPR036779 -
Lja1g1786 660 Gene3D Transferase(Phosphotransferase) domain 1 421 654 - -
Lja1g1786 660 ProSiteProfiles LysM domain profile. 170 218 IPR018392 -
Lja1g1786 660 ProSiteProfiles Protein kinase domain profile. 347 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1786 660 SUPERFAMILY LysM domain 171 219 IPR036779 -
Lja1g1786 660 PANTHER PROTEIN LYK2 11 658 - -
Lja1g1786 660 CDD LysM 171 218 IPR018392 -
Lja1g1786 660 Pfam Protein kinase domain 359 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1786 660 SMART LysM_2 171 219 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1786 Lja-Chr1 20208491 20210509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1786 48 657 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.729 2.66e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja1g1786 Pkinase 3.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1786 - - gmx:100816082 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1786 1 20208491 20210509 Lja1g1786 1 20208491 20210509 ECH