Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1782 ATGCCGGAGGAAACAACGTCGATCGACTACGTCATGGAGGCAGCTTCCGGCCCCCACTTCTCCGGCCTCCGTTTCGACGGCCGTTCACCGTCGTCTCCGTCAACCTCAACCACTCCTCCCGCCGATTCAACCCTCGATTCCCTTCTTCCCAATCCACCCTTCGTCATTGGTGTTTCCGGTGGTACCGCTTCTGGAAAAACCACCGTCTGCGACATGATCATTCAGCAGCTTCACGACCACCGCGTCGTGCTCGTCAATCAGGACTCGTTTTATCGCGGGTTGAAGCCTGAAGAGCTTGAACGCGTTCACGAGTACAATTTCGATCATCCTGATGCTTTTGACACTGAGCAGCTGTTAGAGTGTATGAGGAAACTCATCAGTGGCCAGATTGTTCAAGTTCCCATTTACGATTTTAAGAAGCATCAACGCTCTTCTGATAGTTTTCGTCAGGTCAATGCCTCTGATGTCATCATATTAGAAGGAATTCTTGTGTTCCATGATCAAGGTGTCCGCGATCTGATGAACATGAAGATCTTTGTTGATACAGATGCTGATGTGCGGCTTGCTCGTAGAATTAGACGTGACACTGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAGTTTGTTAAGCCTGCATTCGATGATTTTGTTCTGCCATCAAAGAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGCACAAAGCTTGGTCAGCATGATCTATGCAAAATATATCCAAACGTGTATGTTATTCAGTCTACATTTCAGATAAGGGGGATGCATACATTGATTCGTGACAAAGACATATCAAAGCATGACTTTGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCACGGTCTAGGTCATCTGCCTTTCACTGAAATGCAAGTGGTTACTCCAACAGGGTCTGTCTATACTGGTGTTGATTTCTGCAAGAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAAAGCATGGAAAATGCCCTTCGTGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGACAACGGAAAACAGCTTATATATGAGAAGCTTCCTAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTTGCTACAGGTAACTCTGCCAACCAGGCAATTGAATTGCTCATTCAGAAAGGAGTACCAGAGTCCCATATTATATTTCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGTGTGTGTAAAAGGTTCCCATCATTGAAAATTGTCACATCTGAGATTGATGTTGCATTGAATGAAGAGTACCGTGTTATCCCGGGATTGGGCGAGTTTGGCGACCGCTACTTTGGCACTGATGATTGA 1425 0.4491 MPEETTSIDYVMEAASGPHFSGLRFDGRSPSSPSTSTTPPADSTLDSLLPNPPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLKPEELERVHEYNFDHPDAFDTEQLLECMRKLISGQIVQVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEMQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEYRVIPGLGEFGDRYFGTDD* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1782 474 MobiDBLite consensus disorder prediction 27 45 - -
Lja1g1782 474 PRINTS Uridine kinase signature 185 195 - -
Lja1g1782 474 PRINTS Uridine kinase signature 221 234 - -
Lja1g1782 474 PRINTS Uridine kinase signature 199 210 - -
Lja1g1782 474 PRINTS Uridine kinase signature 128 143 - -
Lja1g1782 474 PRINTS Uridine kinase signature 53 70 - -
Lja1g1782 474 PRINTS Uridine kinase signature 83 94 - -
Lja1g1782 474 Pfam Uracil phosphoribosyltransferase 271 472 - -
Lja1g1782 474 CDD UMPK 55 253 IPR000764 -
Lja1g1782 474 Pfam Phosphoribulokinase / Uridine kinase family 55 241 IPR006083 GO:0005524|GO:0016301
Lja1g1782 474 Gene3D - 257 472 IPR029057 -
Lja1g1782 474 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 31 471 IPR029930 GO:0004849|GO:0044206
Lja1g1782 474 TIGRFAM udk: uridine kinase 54 253 IPR000764 -
Lja1g1782 474 SUPERFAMILY PRTase-like 256 473 IPR029057 -
Lja1g1782 474 ProSiteProfiles UvrC family, homology region profile. 159 242 IPR001162 GO:0009381
Lja1g1782 474 PANTHER URIDINE KINASE 31 471 - -
Lja1g1782 474 CDD PRTases_typeI 330 445 IPR000836 -
Lja1g1782 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 246 IPR027417 -
Lja1g1782 474 MobiDBLite consensus disorder prediction 19 46 - -
Lja1g1782 474 Gene3D - 51 256 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1782 Lja-Chr1 20156275 20162127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1782 1 474 PRT Gene Family AT5G40870 85.714 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1782 K00876 - gmx:100780005 883.634