Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1765 ATGATGGAGGTGGAGAAGCCAAATCTGGAATCAGGGTTTCCCTTCTGGAAACCGCTTCCTCGCATGTTCCCACCCGACTCTCCTTTCTTCGCTCCTGGTAACCTCGAACGAGAGCTTCTTGCTAAACAGGTTGCCTTGGAATTTCCAGAAGAAAAGCTAGAGCTTGAGAATTGGATACAAGAAGAAGCTAGGGAAGTGTTTTGTCCCATTGTCGGTTGTCGAGCGCGGTTGAAATCATTAGAGGACTTTGAAAATCACTATAGTGCAAGGCATCACTCTGCATGCTGTTCTGTGTGTTCCAGAGTCTACCCGACATCGCGTTTGCTCAGCATACATGTATCTGAAGAGCATGATTCTTTCTTTAAGGCAAAAGTTGCGCGTGGCTATGATGTGTATGAATGCTTAGTGGAAGGTTGTGGTTTGAAATTCAAAAGCTACACTAGTAGGAAGCAGCATCTAGTTGACAAGCATGGATTTCCCAAGTCATTTCAGTTTTTCAAGAAGGCTGCACCTTCAAAGAAAGAGAGGCTAAAGACTCAACACAAACAAGCTGCTCATAAGGAGGATGCTTCTGGAATGATGGAAGTGGAAAATGCAGCCATGGATGACCTTGTTTCAGCAGTCTCTAGATTGAATACTTCGGACTCCACTCCGTCTTCAATCAGCTTCGGCCGCCGCCCCAAAGGCTTGTCATTTGTCCCTCGATCTGTTCAGCGTGGAAATAGATGA 729 0.4582 MMEVEKPNLESGFPFWKPLPRMFPPDSPFFAPGNLERELLAKQVALEFPEEKLELENWIQEEAREVFCPIVGCRARLKSLEDFENHYSARHHSACCSVCSRVYPTSRLLSIHVSEEHDSFFKAKVARGYDVYECLVEGCGLKFKSYTSRKQHLVDKHGFPKSFQFFKKAAPSKKERLKTQHKQAAHKEDASGMMEVENAAMDDLVSAVSRLNTSDSTPSSISFGRRPKGLSFVPRSVQRGNR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1765 242 PANTHER ZINC FINGER PROTEIN 511 11 239 - -
Lja1g1765 242 SMART c2h2final6 132 157 IPR013087 -
Lja1g1765 242 SMART c2h2final6 66 91 IPR013087 -
Lja1g1765 242 SMART c2h2final6 94 117 IPR013087 -
Lja1g1765 242 MobiDBLite consensus disorder prediction 213 242 - -
Lja1g1765 242 ProSitePatterns Zinc finger C2H2 type domain signature. 134 157 IPR013087 -
Lja1g1765 242 PANTHER UNCHARACTERIZED 11 239 IPR039258 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1765 10 242 C2H2 Transcription Factor Family AT5G14140 62.551 4.78e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g1765 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1765 - - gmx:100819557 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1765 1 19968438 19970579 Lja1g1765 1 19968438 19970579 ECH