Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1754 ATGAATGATTCTTCAGGAGATAACTGGCTTAATCCGTTTGATGACGAGCTTTATATCATCGATGAGGATGATAGTCTGAATTCTAGCCCTGCCAACGGTTTGAAGCAGGGTGTGAATGAAGGGGATAATGATGGGGAAAATTTTGTGGATGTCGATGAGCTGTTTGAAACTGGAAATGACAGTCAAAAAAACTCTGATGTAGAAGTTAAAGTCATGAAAAAGATTACTGAATTGTCTGCAGACGACATTAGAGGGATGGATTTCTCTTCTGAGGAGGAAGCATGTGAATTCTATTCTAAATATGCTCGTATTCGTGGATTCTCTCCAAGAAAAGATGATGTATACAAGGATGATGATGGCAAGATTATCTCACGACAGGTGGTGTGCAATAGGGCTGGACAAAGGCATCAGAAGCATATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGAGTGGGTTGCCTTGCTAGAATTCGATTTCGTTGTTTTTCTAGCAGTAAAAGGTGGAAAGTGGTTTTTTTTTGCGATGAACACAATCACCCATTAACACCATATAAGCATGTTCATTTGATTCCAAAATTCCGGCAATTGAGTGAAGGGGACAAAGCTCAAGCAGAAGGTATGAACCTATTTGCTGGGATGAGAAGTGAGTATATTGATGAATTTCCAAGCAATCTAGTTTCTAAGAGGTGGTTGAAAACAGCCAAGTCTGCTCATGTGTATTCAATTTCAGAGCCTAGTATTCATTCACAGAATATGAAATTGTTGCGAAAAGGAGCTATGTCTGCCGCATGCAACTATCTCGCAGAAATAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTTTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTAGTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTGTACAGGGTAGAGGTGCCCCCAAGAGGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTGAAGGAATTGAGGACAGCACAGACGACGAGGCAAACGTTGGCAGCGTTGATCGGCAGAATAAGGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAGTATCTAACAAGCGTTCAAATCAGAACACGGTGTCGACAAAACAAAATAAGCGTAAATCTAAGCAGCGAGAAGTCCCAGTCATGATTCATTCAAGCCAAGTATCTGTGAATGAAGTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGAATCTGTGAATCAGGTAAAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACTAATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGCCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACTCTATTTCAAGCTGGAGCTTCTGGCTTACTCCCGACATTTTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCTAGTTTAGGAAATAATTGA 1755 0.4228 MNDSSGDNWLNPFDDELYIIDEDDSLNSSPANGLKQGVNEGDNDGENFVDVDELFETGNDSQKNSDVEVKVMKKITELSADDIRGMDFSSEEEACEFYSKYARIRGFSPRKDDVYKDDDGKIISRQVVCNRAGQRHQKHMHNSGRRKQPKPITRVGCLARIRFRCFSSSKRWKVVFFCDEHNHPLTPYKHVHLIPKFRQLSEGDKAQAEGMNLFAGMRSEYIDEFPSNLVSKRWLKTAKSAHVYSISEPSIHSQNMKLLRKGAMSAACNYLAEIACEKDDDFSSVMEDIYKLLRDVQKSRKPGSTTKSAAFNVGDPTVVQGRGAPKRTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASEGIEDSTDDEANVGSVDRQNKGASVASKLKSQQRKQGNDSSSTQVSNKRSNQNTVSTKQNKRKSKQREVPVMIHSSQVSVNEVTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQESVNQVKVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTNGVQVFPQFIQHQNAQVPYQGVQMQTLFQAGASGLLPTFSSTLAAVDRRHNRNSSLGNN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1754 584 MobiDBLite consensus disorder prediction 386 428 - -
Lja1g1754 584 MobiDBLite consensus disorder prediction 24 45 - -
Lja1g1754 584 Pfam FAR1 DNA-binding domain 96 186 IPR004330 -
Lja1g1754 584 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 60 250 - -
Lja1g1754 584 MobiDBLite consensus disorder prediction 439 465 - -
Lja1g1754 584 MobiDBLite consensus disorder prediction 361 465 - -
Lja1g1754 584 MobiDBLite consensus disorder prediction 300 332 - -
Lja1g1754 584 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Lja1g1754 584 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 60 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1754 Lja-Chr1 19771536 19774861 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g1754 FAR1 3.2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1754 - - lja:Lj3g3v0948310.1 278.485