Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1752 ATGGATTGGGACTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGCTAGCTATTGGTGGCTTGGAAGGGCAAAAGAATGAAGAAGCTACAGTGGATTTGAGGCTTGGTGAGGGTTCTGATTCAGTGGAAAAATCAGCCCCAGATACACCAAAGGATCCAGAAGAATCAAAAGCTATGTCATCATCACCTTCTGGATCATCAAAACGATCCCGTCTGCATAATGGATCGCTGAATATGGCTTGCTCGGTTGATGGATGCACTTCTGACCTCAGTGATTGCAGAGAGTATCATCGGCGCCACAGGGTCTGCGAAAAGCATTCCAAAACCCCTGTTGTGTTGGTAGGGGGGAAGCAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTCGGGGAGTTTGATGATGTTAAAAGGAGTTGCAGGAAACGTCTTGATGGACATAACAGACGTAGGAGGAAGCCACCGCCCCCATCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCAAGAATCCTGCACTTTGGTAGCCCTCAGGCATATGCAAACACCATAATGAGAAACATGTGGCCTACCCCTACCAAAACGGAAGCTGAATCTGGTTATGATCATCACCGGCTTCTGTATCGAATCGACAAGCACAGACAGGATAAGGGACATCCTGATCTTTGGCAAGAAAATGTCCCAAAAGCTGGAATTGGTAGTGAAGCAATGCATGGAACTCCCATCTCTCAGCCTAACCTTGGTGCTCCCAATATTGCCCCATCTGCAAGTGGAAAGGGCAATAGGAAGCTCTCTTCAGACGGCAAACCTGGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTTTGGTGCAGTCCAGCATCACCTGTCCAGCGCAGTCTCCTTCAGGATCTTTGGATTTCGGCGCCGTGAACGAGTACTCGGGCTTGGGTAAGGCGAAAGATAAGCCTCCTGGTCCAGTATTTGTTCTGGATGCAAACACAACCAACCTTCATTGCAATGGAATGCTGCAAACGGGGCCTGATGGATTGGTGGAAAATGAGGACTCACTCACCCTTCCTTTTGTCTGGGAGTAG 1128 0.484 MDWDWKEFAWDPSGLELAIGGLEGQKNEEATVDLRLGEGSDSVEKSAPDTPKDPEESKAMSSSPSGSSKRSRLHNGSLNMACSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNRRRRKPPPPSLFMAAEKFMYNYKGPRILHFGSPQAYANTIMRNMWPTPTKTEAESGYDHHRLLYRIDKHRQDKGHPDLWQENVPKAGIGSEAMHGTPISQPNLGAPNIAPSASGKGNRKLSSDGKPGSFDSGCALYLLSTLQSQSPELSLVQSSITCPAQSPSGSLDFGAVNEYSGLGKAKDKPPGPVFVLDANTTNLHCNGMLQTGPDGLVENEDSLTLPFVWE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1752 375 MobiDBLite consensus disorder prediction 33 56 - -
Lja1g1752 375 Gene3D - 73 143 IPR036893 GO:0003677|GO:0005634
Lja1g1752 375 ProSiteProfiles Zinc finger SBP-type profile. 79 156 IPR004333 GO:0003677
Lja1g1752 375 MobiDBLite consensus disorder prediction 240 275 - -
Lja1g1752 375 MobiDBLite consensus disorder prediction 33 74 - -
Lja1g1752 375 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 375 IPR044817 GO:0003677
Lja1g1752 375 SUPERFAMILY SBT domain 80 160 IPR036893 GO:0003677|GO:0005634
Lja1g1752 375 MobiDBLite consensus disorder prediction 57 74 - -
Lja1g1752 375 Pfam SBP domain 82 155 IPR004333 GO:0003677
Lja1g1752 375 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1752 Lja-Chr1 19656749 19659733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1752 1 193 SBP-box Gene Family AT5G50670 42.523 4.99e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja1g1752 SBP 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1752 - - lja:Lj1g3v3847150.1 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1752 1 19656749 19659733 Lja1g1752 1 19656749 19659733 ECH