Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1750 ATGGCCACCACTTTAAATCCACCAATTGGGTTGCGCTTCCTCAAACCACCACCACCTCCGCCGTCACCACTTTCCACCGCTCCACCACCGTTCAAGTTCCCACCACCGCTTCCTCTTCTCAGAATCAACTGCGCTCACTCCTCATTTGAAGTTAGAGATGTTAGCTATCAAGCTCCGGGGACTCAGCTCAAGCTTCTGAATTCAGTGACTTTTTCACTTCCTGAGAAAAGTTTTGGTCTGATTTTCGGACAGAGTGGAAGCGGGAAAACAACTCTCTTGCAGCTTCTTGCTGGTATAAACAAACCGACATCTGGATCTATTTACATCCAAAATTATGGGGATGATGGAAGTCCTAGTCAGTCTCAAGAGCCCTTGGTGCCAGAAAGGGTTGGCATTGTCTTCCAGTTTCCCGAGAGGTATTTTGTGGCTGATAATGTACTTGATGAAGTCACTTTTGGGTGGCCAAGGCAAAAGGGTGGCCATCAATTGAGGGAGAATCTTGCTCTAGGGCTACAGAGGGCAATTAACTGGGTTGGATTAAGTGGGATATCGTTGGATAAAAATCCTCAGTCGCTCAGTGGTGGTTACAAACGTCGTCTTGCCTTGGCAATACAATTAGTTCAAGTCCCCGATCTATTGATATTGGATGAGCCTCTTGCTGGACTTGATTGGAAAGCACGTGCAGATGTTGTGAAGCTTTTGAAGCATCTAAAAAAAGAATTAACTGTGCTAGTTGTCAGCCATGATTTGAGAGAGTTTGCAAGTCTAGTCGATCGATCGTGGAGGATGGAAATGGGTGGCAACCTTAGAGAGGAGTTTCTACCTTTATAA 831 0.4585 MATTLNPPIGLRFLKPPPPPPSPLSTAPPPFKFPPPLPLLRINCAHSSFEVRDVSYQAPGTQLKLLNSVTFSLPEKSFGLIFGQSGSGKTTLLQLLAGINKPTSGSIYIQNYGDDGSPSQSQEPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKGGHQLRENLALGLQRAINWVGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLREFASLVDRSWRMEMGGNLREEFLPL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1750 276 Pfam ABC transporter 66 219 IPR003439 GO:0005524
Lja1g1750 276 PANTHER ABC TRANSPORTER I FAMILY MEMBER 11, CHLOROPLASTIC 45 272 - -
Lja1g1750 276 Gene3D - 41 273 IPR027417 -
Lja1g1750 276 PANTHER HEAVY METAL TRANSPORTER 45 272 - -
Lja1g1750 276 SMART AAA_5 75 267 IPR003593 -
Lja1g1750 276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 274 IPR003439 GO:0005524
Lja1g1750 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 266 IPR027417 -
Lja1g1750 276 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g1750 276 MobiDBLite consensus disorder prediction 11 28 - -
Lja1g1750 276 CDD ABC_cobalt_CbiO_domain1 50 266 IPR015856 GO:0005524|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1750 Lja-Chr1 19605612 19615337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1750 50 250 Calmodulin-binding Proteins AT2G36910 25.701 3.66e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1750 - - vun:114196181 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1750 1 19605612 19615337 Lja1g1750 1 19605612 19615337 ECH