Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1748 ATGTTTGATCCACCAGTACCCATGGCTGATGTGTTGAAGAGAAGGTTTATGGAAACCAGTGAGAGTGCTTCCCGTTCGCTTAGTCAACTTTCTGACTCCAAGAGTGTGTCTGGCGAGGATGACTTCTTGGTCCTGACTTCTAGCAAGACAATTTCAGAGTTGAAGGATTTAAAAAAGGATGGTGTCTTTGTTGTCTATGCAACCATTTGTCCTATGGAAGAAGAAGTTGATTGGTGGTACACTGCATGTAGGTGTAATAGGAAGGTTTTTGCTGATGAGAAAATGTTCTTTTGTGAGAGCTGTAATAGGCATGTTCTAGCAGTTTATCCCAGGTATCGCCTCCAGATCACTGTGGAAGACCATTCTGGTAGTGCAAACTTGGTCCTCTTTGATAAGGAAGCATCCTCATTGGTTGGTAAACCATGCGCTGAAATGGTTGAAGCATCTGAGAAAGTAGTAATGATGAGTTATTGTAATATGAAATTTCCTAACGTTATATTTGGAACTAACATATTGGGTATATTATTGCTGATAGGATGA 540 0.4056 MFDPPVPMADVLKRRFMETSESASRSLSQLSDSKSVSGEDDFLVLTSSKTISELKDLKKDGVFVVYATICPMEEEVDWWYTACRCNRKVFADEKMFFCESCNRHVLAVYPRYRLQITVEDHSGSANLVLFDKEASSLVGKPCAEMVEASEKVVMMSYCNMKFPNVIFGTNILGILLLIG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1748 179 PANTHER REPLICATION FACTOR A 1, RFA1 20 146 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja1g1748 179 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 146 - -
Lja1g1748 179 CDD RPA1_DBD_C 51 150 IPR013955 -
Lja1g1748 179 Pfam Replication factor-A C terminal domain 63 151 IPR013955 -
Lja1g1748 179 Gene3D - 34 173 IPR012340 -
Lja1g1748 179 SUPERFAMILY Nucleic acid-binding proteins 47 162 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1748 Lja-Chr1 19592850 19594347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1748 1 139 Core DNA Replication Machinery Family AT5G08020 30.872 4.36e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1748 - - lja:Lj6g3v0923340.1 170.629