Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1745 ATGGATCCCAAGGGCTCAAAGCAGCAGAACCAGGAGGTTGTTCCAAACTTCCTTCAACAACAACAACAAGGGAACAACAACAACAACATGGGAGAGAACAAACCATCCGAGGTTAAGGATTTCCAGATTGTGATTGCTGAGAAAGATGAGAGCAAGAAGCAGTTGGCACCAAAGAGGACCTCCAACAAGGACAGACACACAAAAGTTGAAGGCAGGGGAAGGAGGATAAGGATGCCAGCTCTGTGTGCAGCAAGAATCTTCCAGTTGACCAGAGAATTAGGTCACAAATCTGATGGTGAAACCATCCAGTGGCTTCTGCAGCAGGCTGAGCCATCAATCATAGCAGCCACTGGAACTGGAACAATCCCAGCATCTGCTTTAGCTTCTGCTGCTGGTAACTCTGTTTCACAACAGGGGACCTCTTTATCTGCTGGTTTGCACCAAAAATTTGATGAAATGGGTGGTGGTGGTGGTGCCAATAGTAGGACCAGCTGGGGTATGGTTGGAGGGAATTTAGGGAGACCCCATGTGGCTACAGCCACAGGTTTATGGCCCCATGTCACTGGATTTGGATTTCAATCATCATCATCTGGTCCTTCTAATGCCAATTTGGCCAGTGAGAGTTCAAATTACCTGCAGAAAATTGGGTTCCCTGGGTTTGACTTGCCTGGTGCTACCACCAACATGGGTCCTATGAGTTTCACATCAATTTTGGGTGGGGGCAACAACCAGCACATGCCAGGTTTGGAGCTAGGGTTGTCTCAAGATGGACATATTGGGGTTTTGAATCCACAAGCCCTGAGCCAGATTTATCAGCAGATGGGTCAAAGCAGAGTACACCACCAGCATCAGCATCAGCAGCAAGAACATGAACATCAGCATCAGCATCAGCAGCAGACTCCCAGTAATGATGATTCTCAAGGCTCAGGACAGTAA 936 0.4797 MDPKGSKQQNQEVVPNFLQQQQQGNNNNNMGENKPSEVKDFQIVIAEKDESKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALASAAGNSVSQQGTSLSAGLHQKFDEMGGGGGANSRTSWGMVGGNLGRPHVATATGLWPHVTGFGFQSSSSGPSNANLASESSNYLQKIGFPGFDLPGATTNMGPMSFTSILGGGNNQHMPGLELGLSQDGHIGVLNPQALSQIYQQMGQSRVHHQHQHQQQEHEHQHQHQQQTPSNDDSQGSGQ* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1745 311 MobiDBLite consensus disorder prediction 273 311 - -
Lja1g1745 311 MobiDBLite consensus disorder prediction 1 35 - -
Lja1g1745 311 MobiDBLite consensus disorder prediction 41 70 - -
Lja1g1745 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 310 IPR005333 GO:0003700
Lja1g1745 311 Pfam TCP family transcription factor 60 272 IPR017887 -
Lja1g1745 311 MobiDBLite consensus disorder prediction 1 70 - -
Lja1g1745 311 ProSiteProfiles TCP domain profile. 62 116 IPR017887 -
Lja1g1745 311 MobiDBLite consensus disorder prediction 282 298 - -
Lja1g1745 311 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 22 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1745 Lja-Chr1 19556120 19558000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1745 1 311 TCP Transcription Factor Family AT3G27010 55.455 1.32e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja1g1745 TCP 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1745 - - vvi:100253170 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1745 1 19556120 19558000 Lja1g1745 1 19556120 19558000 ECH