Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1734 ATGATCAATTCAATGTGTGGAAGCTCAGTGTCTCTCAAGAGTGAGAACTCCAGAAACAAACCTCAACCCACTTCTCCAAATGAATCAGTTTTGCAGTCCAAGAAAAATGCCACTCAATCCTCTGCTGATTTAGAGCAGACAAGCCTGAATCTAACCCCACCAAGCTTGAACCTTCCTGCACTCAAATTTGACTTGGATGGAGATGTGGAAGTGCAATCACCAGACAGTTCAATGTGGGAGTCTTTTTTCTCTGATCATTTATTGGATGGTGACTTCATGATCTCTTCTCCAGTGAGGAATAATGTTCCTTCCCCACAAGCCTCTACCTTCAACAGCAACTATAACTATGCTCATCAGGGGATTCAAAGCCAATCTCTTTCAGGGTGTTCACCACCTCGTTTTTCATCCCCTCTTGGAGCCTTTAACAGTAACAAAGGGAAAGGACTTAGTCCTCTCCACAGGGTGTTTAACTCACCAAACAACCAGTACATGCAGCATGTTGAGAACCTTGCCCTGCCAGCAATTGAAGAGTTCTTGGAGGAGTATCAAGGAGATCATGGCCTAGGTGGTGGTGGAGGGTATTCAAATTCATCAAACAAGGTCTCTTCTGATATTGGAAGCTCATCTGAATGCTTTGACATGCAAAATCACATTCCATCCATGTTGGACAGCTTGACAATGCAAAATTCCTCAAGGTACTGTGGTTCTGTTAGTGAAGATTCCTCAGTGCATGGTGGTTCCTCTCAGTTGTCCCAAGACAGTGATTTCTATCATCAGATGGGGTCCATGGCTAGTGCTTCCCTCTCACAAGCTCTGCAACAAGAAAGGTACCAAGAGAAACAGCAAAAGCAACACCAAACACAACAACAGCAACAGCCCCAGCAACAACAACAAAATCTGACAGTCCCTATTCCAATTGGAATGGACCAGGAGCAAGACAGTGGCCTTCAACTTGTGCACCTACTTCTAGCTTGTGCTGAAGCAGTGGCCAAAGAGGAATATATGCTGGCAAGAAGGTACCTGCACCATCTGAACAGAGTTGTAACACCACTAGGCGACTCCATGCAGCGCGTGGCAGCATGCTTCACTGAATCACTCAGCGCAAGGCTCGCTGCAACACTCACCACCAAGCCACAAAGCATCTCCAACGGCACCTCCATGCCACGATCATCATCATCATCATGTCTCTCACCCTTCCCATCAAACTCCATAGAAGTCCTCAAGATCTACCAGATCGTCTACCAAGCCTGCCCTTATGTAAAATTTGCCCACTTCACCGCCAACCAAGCCATCTTCGAGGCGTTTGAGGCTGAAGAACGCGTCCACGTGATAGACCTGGACATCCTCCAAGGTTATCAGTGGCCCACGTTCATGCAGGCTCTCGCAGCGCGCCCTGGTGGGGCACCCTTCCTCCGAATAACCGGAGTGGGACCGTGCATCGACTCGGTCAGAGAAACAGGTCGGTGCTTGACCGAATTAGCACACTCCCTCCGCATCCCCTTCGAGTTCCACCCGGTAGGGGAACAACTAGAGGACCTAAAACCACACATGTTTAACCGCCGCGTCGGGGAGGCACTGGCGGTTAACACAGTCAACCGCCTCCACCGCGTCCCCGGGAGCCACTTGGGGAATTTGTTGTCCATGATAAGAGACCAAGCACCTAACATAGTGACCCTCGTGGAGCAAGAAGCAAGCCACAACGGGCCTTACTTCTTGGGGAGGTTTCTTGAGGCACTGCACTACTACTCAGCGATCTTTGACTCCTTGGACGCCACGTTTCCGCCGGAGTCAGCTCAGAGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATAAGGAACATTGTGGCGTGCGAGGGGGCGGAGAGGATAGAGAGGCACGAGAGGTTGGAGAAGTGGAGGAAGATCATGGAAGGGAAAGGGTTCAGAGGGGTGGCGCTGAGTCCGAACGCGGTGACTCAGTCGAGGATATTGCTTGGTCTGTACTCGTGTGATGGGTACAGGTTGACGGAGGACAAAGGGTGCTTGTTGCTTGGGTGGCAGGACAGAGCTATCATCGCTGCCTCTGCATGGAGATGCTGA 2082 0.5043 MINSMCGSSVSLKSENSRNKPQPTSPNESVLQSKKNATQSSADLEQTSLNLTPPSLNLPALKFDLDGDVEVQSPDSSMWESFFSDHLLDGDFMISSPVRNNVPSPQASTFNSNYNYAHQGIQSQSLSGCSPPRFSSPLGAFNSNKGKGLSPLHRVFNSPNNQYMQHVENLALPAIEEFLEEYQGDHGLGGGGGYSNSSNKVSSDIGSSSECFDMQNHIPSMLDSLTMQNSSRYCGSVSEDSSVHGGSSQLSQDSDFYHQMGSMASASLSQALQQERYQEKQQKQHQTQQQQQPQQQQQNLTVPIPIGMDQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTESLSARLAATLTTKPQSISNGTSMPRSSSSSCLSPFPSNSIEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPTFMQALAARPGGAPFLRITGVGPCIDSVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGSHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPEIRNIVACEGAERIERHERLEKWRKIMEGKGFRGVALSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1734 693 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 691 IPR005202 -
Lja1g1734 693 Pfam GRAS domain family 318 692 IPR005202 -
Lja1g1734 693 ProSiteProfiles GRAS family profile. 309 692 IPR005202 -
Lja1g1734 693 MobiDBLite consensus disorder prediction 268 298 - -
Lja1g1734 693 MobiDBLite consensus disorder prediction 1 43 - -
Lja1g1734 693 MobiDBLite consensus disorder prediction 378 397 - -
Lja1g1734 693 MobiDBLite consensus disorder prediction 233 253 - -
Lja1g1734 693 PANTHER GRAS FAMILY PROTEIN RAM1 37 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1734 Lja-Chr1 19371980 19374302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1734 282 693 GRAS Transcription Factor Family AT1G66350 42.105 1.15e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g1734 GRAS 6e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1734 - - gmx:100775374 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1734 1 19371980 19374302 Lja1g1734 1 19371980 19374302 ECH