Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1729 ATGGAGAATAAAAACACCGCCGACGACGCTTCTCATTCTCCCGCCGAGGCAGAACCGGCATCGTCACCGCCACCTCCGTCGAATCAGGAGGGAGATCAGGCGGTGGAGGAGGAGGAGAAGAAGGAAGAGGTTGATGACGATGACGTGAAGTCTCCTCCGCCGAGTCTTGATAAGGTTTCAGAAGAGATAGATCAATGGCTCGCGACTCCATTGAAGGAAGGTGATGACAATGCTGAGGAGGGAGAGTCGTCGTTTGAGGTGCCTGGTTCCGTGGAGAAGTTTCTGGATCTGGTGGAGGAGAAGATAGCGAAGTATGATGCGGGAGCAGGGAAAGCTAAATGGGGAGAGGTTGCGGAGGAAGATTCGTGGTTGTTAGAAACCGTCGATCGGGTTTCTAAGCTGATGAAAACGCTGTCTGATCATGTTCATGAGAACTCAGAGGAGAAGGAGAATAATGGGAAGAGAAGCTCGCTTGTGAACCGCACCGGCATGATTCAACAGCGTGCCATGTCGGTTTTGGAGGAGGATTTCCGGTGGTTATTGGAAGAATCTAGAGCCCCAACCGAATTGGATCACGGCGAGAATACTGATCCTAAAGGGAAGCAGCAACAACAAGAAAAGTCGGATCAGGATCCTGATTTTTTTCTTCAACTCAAGGTGACGAATTTCCCGGGTTATTCAGAGGAGACGATTGTTAGCCTGAGCAAGATCGCCGGCGCAATGCTCTCCGGCGGTTACGAATCGGAGTGCTGCCAGGTGTACATCATGGCGAGGAGGAACGCGTTTGAGGAGATTCTGGTCAACCTTGGCCTGGAGAGGATCAGCATTGACGAGATGATCCAGAAGGTGCAGTGGGAGGCCATGGCGAGAGACATGATCCCTGCATGGATCAAGACGTTCTGGCAGTGCGCCACCGTGTTCTTCCCCGGTGAGAAGAGTCTCGCCGAGGCAGTGTTCCCCGAGCATCCATCTGTTGCGGCGGGGCTCTTCAGCAACCTCTCTCGTGGCGTGGTCATCCAGCTCCTCAACTTTGCAGAGGGAGCTGCGATGACCAAGCGTGCGGGAGAGAAGCTCTTCAAGCTCTTGGACATGTATGAGACGTTGGGCGATGTGATCCCGAAGTTCCATGGGCTCTTTCCAGAAGAGTCTGAGGAAGAGCTGAAGACGGAGATGAGCCTTGCCAAGTGCCGGCTTGGCGAGGCTGCGATCTCCATCTTCTGCGACTTCGAGAATTCCATCAAGACAGAGACCGTCAAGACTCCGGTCCCGGGCGGAGCCGTGCACCCGCTCACGCGCTACATCATGAACTACCTCATCATAGCAGGGGACTACAAGGAAACCCTAGAGCAGGTTTTCAAGGAGCACTCCAAAATTGAGCGTGCGGATTCCACCAGCAGGTCATTCCACGATCAAAATGGCGTCGTTGTTGACACCACCACGGAGGAGTTGTCACCGTTCGCGGCTCAGGTGAAGAGGGTGATGGAGCTTTTAGACTCAAGCCTGGAGGGGAAGGCGAGGTTGTATCGTGACATAGCTTTGAGCAACTTCTTCTTGATGAACAATGGTCGGTACATTCTTCAGAAGATAAAGGGGTCGACGGAGATGAGCCAGGTGATGGGGAACACGTGGTGCAGGAAGAGGTCGTCAGAGCTGAGGAACTACCATAAGAGCTACCAGAGGGAGACGTGGAATAGGGTGGTGACGTGTCTGAGACATGAAGGGCTGAACGTGAATGGTAAGGTGCAGAAGCCGGTGCTAAAAGAGAGGTTCAAGAGCTTCAACATGTTGTTTGATGAGATCCACAGGACGCAGAGCTCGTGGGTGGTGAAGGACGAGCAGCTTCAGTCGGAGCTGAGGGTTTCAATATCGGCAGTGATTATTCCGGCGTACAGAGCGTTTGTGGGGAGGTTTGCGCAACACTTGGACCCTGGGAGGCAGACAGAGAAGTATATAAAGTATCAGCCTGAGGATATAGAGAGTTACATTGAGGAGTTGTTTGAGGGAAAGGCGCCTCACCAGTCCACTGGTAGAAGAAAAACATAA 2043 0.5286 MENKNTADDASHSPAEAEPASSPPPPSNQEGDQAVEEEEKKEEVDDDDVKSPPPSLDKVSEEIDQWLATPLKEGDDNAEEGESSFEVPGSVEKFLDLVEEKIAKYDAGAGKAKWGEVAEEDSWLLETVDRVSKLMKTLSDHVHENSEEKENNGKRSSLVNRTGMIQQRAMSVLEEDFRWLLEESRAPTELDHGENTDPKGKQQQQEKSDQDPDFFLQLKVTNFPGYSEETIVSLSKIAGAMLSGGYESECCQVYIMARRNAFEEILVNLGLERISIDEMIQKVQWEAMARDMIPAWIKTFWQCATVFFPGEKSLAEAVFPEHPSVAAGLFSNLSRGVVIQLLNFAEGAAMTKRAGEKLFKLLDMYETLGDVIPKFHGLFPEESEEELKTEMSLAKCRLGEAAISIFCDFENSIKTETVKTPVPGGAVHPLTRYIMNYLIIAGDYKETLEQVFKEHSKIERADSTSRSFHDQNGVVVDTTTEELSPFAAQVKRVMELLDSSLEGKARLYRDIALSNFFLMNNGRYILQKIKGSTEMSQVMGNTWCRKRSSELRNYHKSYQRETWNRVVTCLRHEGLNVNGKVQKPVLKERFKSFNMLFDEIHRTQSSWVVKDEQLQSELRVSISAVIIPAYRAFVGRFAQHLDPGRQTEKYIKYQPEDIESYIEELFEGKAPHQSTGRRKT* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1729 680 Gene3D Exocyst complex component Exo70 113 675 - -
Lja1g1729 680 PANTHER EXOCYST COMPLEX PROTEIN EXO70 45 673 IPR004140 GO:0000145|GO:0006887
Lja1g1729 680 MobiDBLite consensus disorder prediction 140 155 - -
Lja1g1729 680 SUPERFAMILY Cullin repeat-like 124 667 IPR016159 -
Lja1g1729 680 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 45 673 - -
Lja1g1729 680 MobiDBLite consensus disorder prediction 185 208 - -
Lja1g1729 680 MobiDBLite consensus disorder prediction 140 160 - -
Lja1g1729 680 MobiDBLite consensus disorder prediction 1 87 - -
Lja1g1729 680 Pfam Exo70 exocyst complex subunit 295 664 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lja1g1729 680 MobiDBLite consensus disorder prediction 185 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1729 Lja-Chr1 19288179 19290274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1729 55 680 EXO70 exocyst subunit family AT5G13990 52.381 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1729 K07195 - gmx:100820172 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1729 1 19288179 19290274 Lja2g2923 2 49743326 49745443 PCT