Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1727 ATGGGTCGTTGCCCTTGTTTCGGTTCGAGGAAGAAGAGTAAGGAGAAGAATCTCAACGATCGGGAAGAGGAGGAAAAGAAGCTTAAATCTGTAGCTTCAACTGTTTCTGGAAGATCTTCAGGACGAAGATCAGAAGCAACTCCAACAGAGGATACTGACAGTTCTAATAAGGCTCAGATATTCACCTTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACTTTTATTGGTCAAGGTGGATTTGGAACAGTTTACAAAGGACAGCTAGAGAGAACGAATCAGGTTGTGGCTGTTAAAAGACTTGATACAACTGGTCTCCAAGGAGAGAAAGAATTTCTTGTGGAGGTTCTCATGCTTTCTCTTCTACATCATCCCAACCTTGTTAATATGATTGGGTACTGTGCTGAAGGGGATCAACGTCTACTTGTGTATGAATACATGCCTATGGGATCCTTAGAATCTCATCTCCATGATCTTTCATCTGACCAAGAACCTCTTGATTGGAATACCAGAATGAAGATAGCTGCTGGGGCCGCAAGAGGATTAAATTATCTGCACCATGAAGCAAATCCTTCTGTTATATACAGGGATCTGAAAACATCCAATATACTCTTGGGTGAAGGTTTCCATCCAAAACTTTCTGATTTTGGGCTTGCAAAGTTTGGTCCAACTGGAGACCAATCATTTGTTAACACAAGGGTCATGGGAACACATGGTTACTGTGCTCCTGAGTATGCCACAAGTGGAAAATTAACAATGAGATCTGACATATACAGTTTTGGGGTTGTGTTGTTGGAGCTAATTACTGGACGTAGAGCATATGATGAAACCCGTGGCCCTGAAAAGCATCTTGTTGACTGGGCACGCCCAATGTTTAGAGACAAAAGGAATTTTCCAAGATTGGTAGATCCGCGTTTGGGAGGTCACTTCCCAGGAAGTTGTCTAAAGATGGCTATTGAAATGGCTTCCATGTGTCTTCGAGAGGAGCCGCGGCACCGGCCTGATGCAGGTGATATAATGCTAGCCCTAGATTTTTTGTCATCCAAGCAGTATGTCCCAAAAGTATCAGGTACAGTTAAGACAGGAGGGATGGAGAGTGGTGACTCCCCAAGTCCAAAAGAAGGATCAATGGTTTTGGCTAAAGACTCACAGAGAGAGAAAGCTGTTGCAGAGGCCAAGCTTTGGGGGGAGACATGGAGACATAAAAGAAAACAAAGTGGCCAAAGTACTCCTGAGGATGCAAGTAGGTAG 1260 0.4357 MGRCPCFGSRKKSKEKNLNDREEEEKKLKSVASTVSGRSSGRRSEATPTEDTDSSNKAQIFTFRELATATKNFRDETFIGQGGFGTVYKGQLERTNQVVAVKRLDTTGLQGEKEFLVEVLMLSLLHHPNLVNMIGYCAEGDQRLLVYEYMPMGSLESHLHDLSSDQEPLDWNTRMKIAAGAARGLNYLHHEANPSVIYRDLKTSNILLGEGFHPKLSDFGLAKFGPTGDQSFVNTRVMGTHGYCAPEYATSGKLTMRSDIYSFGVVLLELITGRRAYDETRGPEKHLVDWARPMFRDKRNFPRLVDPRLGGHFPGSCLKMAIEMASMCLREEPRHRPDAGDIMLALDFLSSKQYVPKVSGTVKTGGMESGDSPSPKEGSMVLAKDSQREKAVAEAKLWGETWRHKRKQSGQSTPEDASR* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1727 419 MobiDBLite consensus disorder prediction 1 57 - -
Lja1g1727 419 SUPERFAMILY Protein kinase-like (PK-like) 52 348 IPR011009 -
Lja1g1727 419 Coils Coil 11 31 - -
Lja1g1727 419 MobiDBLite consensus disorder prediction 8 31 - -
Lja1g1727 419 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Lja1g1727 419 MobiDBLite consensus disorder prediction 360 419 - -
Lja1g1727 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Lja1g1727 419 SMART serkin_6 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1727 419 CDD STKc_IRAK 79 342 - -
Lja1g1727 419 PANTHER OS07G0668900 PROTEIN 5 365 - -
Lja1g1727 419 PANTHER OS07G0668900 PROTEIN 5 365 - -
Lja1g1727 419 Gene3D Transferase(Phosphotransferase) domain 1 150 361 - -
Lja1g1727 419 Gene3D Phosphorylase Kinase; domain 1 32 149 - -
Lja1g1727 419 Pfam Protein kinase domain 74 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1727 419 ProSiteProfiles Protein kinase domain profile. 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1727 419 MobiDBLite consensus disorder prediction 382 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1727 Lja-Chr1 19273034 19278343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1727 50 410 Glycoside Hydrolase AT3G07070 58.602 1.13e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja1g1727 Pkinase 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1727 K13430 - gmx:100809298 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1727 1 19273034 19278343 Lja1g1727 1 19273034 19278343 ECH