Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1725 ATGGGTCGTGCAAAAGTAATCTTGAAACCAATTGAAAAATTGAATGCTCGGAAATTAACTTTCAGTCAAAGAAAGAAGGGACTTGTGAAGAAAGTTTCTGACTTTCACAAATTTTGTGGCAATGAAGCATGCTTGATTGTGTATGATGATGATGGTAATGGTGAACCAGAGATTTGGCCTCAAGAACCTTCAAAAGTACACTTAATCCTTGAGAAGTATGAGCATCAAAAGAGTAACAAATATAAACCTGCTCCTAAGACATTTGATATGGAAAACTTCTTTGATAATAGGAAAGTGATGGTTGAAGCTGAGATTGCTAGAGTGAAGAAGGAGATATTTAAGGTGAAATATCCAACTTGGGATCCATGTTTCAATGAGCTGACAATGGAGCAACTGAGTTTCTTCATGGCTAAGCTGAGTGCTAAGATTGAAGCTTGTGATCATAGGATTAATATGTTGAAGATGGAGCGGCAAAGCGAAGCTTGCAGTAGCATGCAAAAAATGGCCCAGGAGAGTGCTGAATCCTCAAATCCAAGGCAACTTAATTCCATGTTGAATATCTCTCAATGCCAACTTGTATGTGCTCCTGTGAAGCCACTTAATGATAATAGTGTGATGGTGGATTCAACTGGTCAAGTAGATGCTTCCGTCACCGCCTTCGGTAGCGTGCAAAACATGGCTCGGGAGAGTGCCGAATCCTCAAATGCAAGCCAACTGAATTCCATGTTGAACATCTCTCAAGGCCAACTTGTTTCTGCTCCTACGAAGCCACTTAATGATAATAGTGGAATGGTGGATTCCACTTTTAAAGTAGACCATGTGCCTCTTGATTCAACAAACAAACTTGATTGA 852 0.4002 MGRAKVILKPIEKLNARKLTFSQRKKGLVKKVSDFHKFCGNEACLIVYDDDGNGEPEIWPQEPSKVHLILEKYEHQKSNKYKPAPKTFDMENFFDNRKVMVEAEIARVKKEIFKVKYPTWDPCFNELTMEQLSFFMAKLSAKIEACDHRINMLKMERQSEACSSMQKMAQESAESSNPRQLNSMLNISQCQLVCAPVKPLNDNSVMVDSTGQVDASVTAFGSVQNMARESAESSNASQLNSMLNISQGQLVSAPTKPLNDNSGMVDSTFKVDHVPLDSTNKLD* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1725 283 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lja1g1725 283 PANTHER MADS BOX PROTEIN 3 265 - -
Lja1g1725 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Lja1g1725 283 Gene3D - 15 95 IPR036879 GO:0003677|GO:0046983
Lja1g1725 283 PANTHER PROTEIN, PUTATIVE-RELATED 3 265 - -
Lja1g1725 283 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lja1g1725 283 Coils Coil 136 156 - -
Lja1g1725 283 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1725 Lja-Chr1 19262363 19263214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1725 1 149 Type I MADS-box Gene Family AT5G55690 31.818 2.26e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g1725 SRF-TF 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1725 - - lja:Lj1g3v3892000.1 384.03