Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1723 ATGGAGAACCATTTGAATCCCAGGTTGCCAGTTGGGTACAGGTTTGACCCCACTGATGATGTTCTGGTTGATGCCTACCTCAAGAGAAAGATCTTTTCTCAGCCTCTTCCTGTTGATGTCGTCCCAGAACTTGATGTGTTTCAAGTTGAGCCTTGGAGGCTGCCAAAGGGAGATGAGAAGATTTTCACTGATCGCCAGTATTTCTGGTTCAACACTAGGGGGCGTGACCTTGAAAGCCAGGACTGGAGAGTCGCTGGGAATGGCCAGTGGAGGATGTCTAAGAAAGGAAAAGATGTTCCGATCCCGGGAGACAACCAGCTGATCGGGAAGAAGAACACCTTGATTTTCTGGAAGGAGCAGGGAGCCGCCGCTGCTAAGGAGACCAAATGGGTGATGCATGAGTTTCGCCTCGAGATAATAGCTAGCCCCACAAGGATGTCGCATTTGGCGATGTATCGGATATTCCAGAAGAAAGGTGTGAAGAAGGTGAGGCACGGCCCGCACAGGAGAGGTGGCAGGAATGCTGCGATCGGTGGCATGAATTCAGGCAGTACTGCTGATGTCATTGATTTGAATGAAGAGAGTGGCAGTTTCTCAGGTCCTCCCCCAATGACCCCTTCCTTGAGCGAGGGCAGTGATTCCGGAGAGAATTATATTAGGAGTTGGTAG 669 0.5052 MENHLNPRLPVGYRFDPTDDVLVDAYLKRKIFSQPLPVDVVPELDVFQVEPWRLPKGDEKIFTDRQYFWFNTRGRDLESQDWRVAGNGQWRMSKKGKDVPIPGDNQLIGKKNTLIFWKEQGAAAAKETKWVMHEFRLEIIASPTRMSHLAMYRIFQKKGVKKVRHGPHRRGGRNAAIGGMNSGSTADVIDLNEESGSFSGPPPMTPSLSEGSDSGENYIRSW* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1723 222 MobiDBLite consensus disorder prediction 178 222 - -
Lja1g1723 222 ProSiteProfiles NAC domain profile. 9 157 IPR003441 GO:0003677|GO:0006355
Lja1g1723 222 Gene3D NAC domain 18 161 IPR036093 GO:0003677|GO:0006355
Lja1g1723 222 MobiDBLite consensus disorder prediction 164 222 - -
Lja1g1723 222 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Lja1g1723 222 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Lja1g1723 222 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 9 165 - -
Lja1g1723 222 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1723 Lja-Chr1 19183882 19185024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1723 8 158 NAC Transcription Factor Family AT5G13180 38.854 2.49e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g1723 NAM 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1723 - - lja:Lj1g3v3892240.1 458.759