Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1719 ATGGAAGACGCTGCCATCTACGAGTTCCTCAAGCACCACCAGCAGCCGCCACCACCACCACCGTCTTCAGCTCCAAGAGCAGCTGCAAGGAGAGGCGGCGCACTATCCCACCACCAACACAACCACCACCCACCGCCGTCATCAACCACCGGACGTACGTTCCCGTGCACCTTCTGCCACCGCAAGTTCTACACCTCCCAAGCTCTCGGTGGCCACCAGAATGCCCACAAGCTGGAGAGAGCCGCTGCTAAGAGAGGCCTCAACCACCACCACAACCACAACAACATCCCTTTCCACCACCACCACAACAACAACAACATGTCATTCCAACCTCCGCCGCCACCACCACCGCCGCCGTCATTTCCCACCGAGCCCAAGCTCAGGCCCATGACGGCGACCATGCCGGAACTTGACTCCGGCGGCCTTCTGTTCCCCCACCACCAACCGTACTGGCTTCATGAAACGGAGCCGCCGTTTCAGTTTCCGGTGCCGGCGCCGGCCCAAGCCCACTATCATCACCACCACCACCACGTTGCAACCACTCTCCCTCTTCTCCCCTTCCACTCTGGTGGTTCTGCTTCCACTACCACCACTCATCAACATGTTCTCTCTCACAACATTGCTGCTCCTGAAGATCATGCTTCAAACCTTGTCAACAGCAACCTCGACCTCACCCTTCACTTGTGA 687 0.5866 MEDAAIYEFLKHHQQPPPPPPSSAPRAAARRGGALSHHQHNHHPPPSSTTGRTFPCTFCHRKFYTSQALGGHQNAHKLERAAAKRGLNHHHNHNNIPFHHHHNNNNMSFQPPPPPPPPPSFPTEPKLRPMTATMPELDSGGLLFPHHQPYWLHETEPPFQFPVPAPAQAHYHHHHHHVATTLPLLPFHSGGSASTTTTHQHVLSHNIAAPEDHASNLVNSNLDLTLHL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1719 228 MobiDBLite consensus disorder prediction 89 124 - -
Lja1g1719 228 MobiDBLite consensus disorder prediction 10 52 - -
Lja1g1719 228 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lja1g1719 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Lja1g1719 228 PANTHER ZINC FINGER PROTEIN JAGGED 38 228 IPR045320 GO:0003700
Lja1g1719 228 SUPERFAMILY beta-beta-alpha zinc fingers 50 81 IPR036236 -
Lja1g1719 228 MobiDBLite consensus disorder prediction 108 124 - -
Lja1g1719 228 PANTHER ZINC FINGER PROTEIN KNUCKLES 38 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1719 Lja-Chr1 19123049 19123735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1719 52 88 C2H2 Transcription Factor Family AT5G14010 78.378 4.71e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1719 - - cam:101499960 104.375