Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1711 ATGCCGTTTCGCTGTGATTACTGCGACTCCAAAAGCGCGGTGCTGTATTGCAAAGCAGACTCAGCCAAGCTCTGCTTGCTTTGCGACCAGCACGTGCACTCCGCCAACGCGCTCTCCCTCAAGCACGTGCGCCACCAGATTTGCGAAGCTTGCCAAAACGACGCCGCATCCTCCCGGTCCTCCACCGACAATCTTTCCCTATGCGACCACTGCCACTCCGGCGCCGCCGACTCATCCCGCCACCGCCTCGAAGGCTTCTCCGGCTGCCCCTCCGTTAGCGAGATCGTCACCGCCCTCGGGCTCGATTTGAAGCAAAGCTGCTCCACCATCGCCACCGTTTCGGTACCTGAATTCGAAGGTCTGTTGGTTGTTCCCTCTCGGAATCGTAGGGATGAGGTGTACGAGCAGCTTGCGGAGGTTGCGAAGAGGAAGAAGAGCCTCTCAGAGATAGAGGGTTCTCTTTCGCTATGTGGGGAACTTAAATTCAATTGTGGTGGTGTTGATGACTTGTTGCTGCAGCAAACGACGCCGTTTACATCTCTGCTCAGTTTGCCATCTGAATTCGATGCGAAAAACAGCGAGTATGGAACTCAACAAGGGGATCTTGCTTGGAACTGCAACTCCCAATATCAGTCTCCTCAGGTGTGGGATTTTCAGTTGCAGAAATCTAGAGATTGCGATGAAGCAAGAATGGTGACATTTGATGGTCTAGAAGAACCTTTCCTATCGATTCAAAACTCATTCCAAAATGTTCCCAGTATGAATTGCTCAACAATCGGTGATGATATTCTATCAAGAAGTCACCAATCGGATCAGTCATCATCAAGCCATGTGAAGAAGAAAGAAGAAAGCAACAAAAAAACTAGAGGTGGGTTGTCATCAGAGTCCAAATTCATTGAATCCATGACATACAGTGACACAAACATGGTAATGGAGCATCTTGCTTGTGGCAATGAAAACATGAGCACCATAAATGCCAAGGTTAGCTTAGAAGAGCTAGCAAAGAACAGGGGGAATGCTATGTTACGCTACAAAGAGAAGAAGAAAACTCGAAGGTATGATAAGCACATTCGCTATGAATCAAGGAAGGCCATGGCTGATACAAGAAAGAGGGTAAGAGGTCGATTTGTGAAGGCGGGTGATACAAATGATGTTCAAGAGTGTTGA 1167 0.4859 MPFRCDYCDSKSAVLYCKADSAKLCLLCDQHVHSANALSLKHVRHQICEACQNDAASSRSSTDNLSLCDHCHSGAADSSRHRLEGFSGCPSVSEIVTALGLDLKQSCSTIATVSVPEFEGLLVVPSRNRRDEVYEQLAEVAKRKKSLSEIEGSLSLCGELKFNCGGVDDLLLQQTTPFTSLLSLPSEFDAKNSEYGTQQGDLAWNCNSQYQSPQVWDFQLQKSRDCDEARMVTFDGLEEPFLSIQNSFQNVPSMNCSTIGDDILSRSHQSDQSSSSHVKKKEESNKKTRGGLSSESKFIESMTYSDTNMVMEHLACGNENMSTINAKVSLEELAKNRGNAMLRYKEKKKTRRYDKHIRYESRKAMADTRKRVRGRFVKAGDTNDVQEC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1711 388 MobiDBLite consensus disorder prediction 273 290 - -
Lja1g1711 388 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 386 - -
Lja1g1711 388 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Lja1g1711 388 Pfam CCT motif 337 379 IPR010402 GO:0005515
Lja1g1711 388 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 4 386 - -
Lja1g1711 388 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja1g1711 388 CDD Bbox1_BBX-like 5 47 - -
Lja1g1711 388 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Lja1g1711 388 MobiDBLite consensus disorder prediction 259 294 - -
Lja1g1711 388 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1711 Lja-Chr1 18899630 18903306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1711 5 381 C2C2-CO-like Transcription Factor Family AT2G33500 37.441 7.48e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja1g1711 CCT 1.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1711 - - aprc:113862926 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1711 1 18899630 18903306 Lja1g1711 1 18899630 18903306 ECH