Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1701 ATGATGATGGATCAGCAAGAGAAGAAAACCGAGGCGTGTGGTTTTGTGGCAGGTGTTGGAGCTGAGCTTGGGTTTGGGTTTGTCACCGTGCAAGGAGACAACAAAATGGTAACACCAAACGGGTCGTCATCGGGTCGGATCTGTGATGATGGGCTTGTTGCTGCTGTTACCACCACCTTTGGAACGGTTCACAAGAAGAAAAGGATGGCCAGACAGAGAAGGGTCTCCTCCACCACCACCACCACCACCACCACCACCATCATCAGCAGCAACAACAAAAGTCCCACATTGCTTGCTGCTGCTTCCAGCTCCTCGCACGTGCCGATCTCCCCGCTTCCTTCTCATAAACCTTCCAAAACTCTCCCTCCCGCACGTAAAATCGATCCTAGAAGGTTGAAATATCTTTTCCAAAAGGAGTTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGTCTTTCCTTCCAGCCCTTGAGTCAAAGGAAGGAATTTTCATCAACATGGATGATATAGATGGTCTTCATGTATGGACTTTCAAGTACAGGTTTTGGCCTAATAACAATAGTCGGATGTATGTACTAGAAAACACTGGAGACTTTGTTAACACACATGGCCTGCAATATGGAGACTCCGTTATGGTTTACCAAGATACTCAAAATCTTAACTATGTTATTCAGGCCAAAAAGGCTTCTGATCAGGATGAGTTTCAGGAAGAAGAAGAAGAAACACCAAGTGATACCGTCAATGACATGCTCCTCAATGACTATGAGGTGAGCAAACCTGATTGTGATTGCTTCAATGGATATGATCCTGCAGTGAATGACACCACAGGCATGTCATTCATATATGAGACAACTTTCTCAAATGACTCCCCACTTGATTTTCTGGGTGGATCAATGACCAATTATTCAAGGATTGGACCAGTTGAAACCTTTGGTTCTGTTGAGAATTTGTCACTTGATGAATTTTACTAA 996 0.4428 MMMDQQEKKTEACGFVAGVGAELGFGFVTVQGDNKMVTPNGSSSGRICDDGLVAAVTTTFGTVHKKKRMARQRRVSSTTTTTTTTTIISSNNKSPTLLAAASSSSHVPISPLPSHKPSKTLPPARKIDPRRLKYLFQKELKNSDVSSLRRMILPKKAAESFLPALESKEGIFINMDDIDGLHVWTFKYRFWPNNNSRMYVLENTGDFVNTHGLQYGDSVMVYQDTQNLNYVIQAKKASDQDEFQEEEEETPSDTVNDMLLNDYEVSKPDCDCFNGYDPAVNDTTGMSFIYETTFSNDSPLDFLGGSMTNYSRIGPVETFGSVENLSLDEFY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1701 331 Gene3D - 132 252 IPR015300 -
Lja1g1701 331 SUPERFAMILY DNA-binding pseudobarrel domain 134 231 IPR015300 -
Lja1g1701 331 CDD B3_DNA 135 236 IPR003340 GO:0003677
Lja1g1701 331 Pfam B3 DNA binding domain 136 234 IPR003340 GO:0003677
Lja1g1701 331 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 55 331 - -
Lja1g1701 331 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Lja1g1701 331 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 55 331 IPR044800 GO:0003700
Lja1g1701 331 SMART B3_2 136 238 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1701 Lja-Chr1 18751178 18754995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1701 2 331 B3 DNA Binding Superfamily AT3G26790 47.059 4.14e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g1701 B3 2.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1701 - - gmx:100783961 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1701 1 18751178 18754995 Lja1g1701 1 18751178 18754995 ECH